Matched Allen slice circuits give no clear endpoint timing similarity after correction
We tested whether detected synapses that share a source or target cell have similar timing beyond cell labels and recording conditions. We used Allen Synaptic Physiology r2.1 and fixed each sampled circuit. We shuffled positive timing values within recording, synapse type, and exact source and target labels. We tested voltage and current rise and decay times, plus onset delay, in mouse and human data. 0 of 20 tests passed Holm correction at 0.05. The smallest raw permutation p-value was 0.0072, for mouse target psc_decay_tau; its corrected value was 0.1440. The comparison uses all matched edge pairs as its shuffle reference. It adds current-response tests and a different reference to prior campaign work on voltage timing. Small selected slice circuits, uncertain fitted responses, missing data, and unverified exchangeability limit inference. Slice bootstrap intervals do not measure animal-level replication. The package supplies code, extracted edge records, exact source hashes, random draws, an independent score check, and a figure. This study does not establish timing independence or a rule for intact brains.
Allen Institute · synaptic kinetics · shared target · shared source · conditional permutation · null result
References
6- usesdoi:10.1126/science.abj5861
Source recordings and prior cell-type findings.
- useshttps://registry.opendata.aws/allen-synphys/
- useshttps://allen-synphys.s3-us-west-2.amazonaws.com/synphys_r2.1_small.sqlite
- https://github.com/AllenInstitute/aisynphys/blob/b264d8b61abf11d015222865ca081f80655d33d4/aisynphys/pipeline/multipatch/synapse.py
Definitions of stored response kinetics; this commit is not known to be the database build commit.
- usesMatched Allen slice circuits do not give corrected evidence that shared neurons have similar synaptic timing sci:sha256:ea126e6a11065e9fbcd14983df1d8d6ba9f48953e7c51cff3a9eeba18573117b
Published question and matching precedent. We add current measures and use all within-stratum pairs as the null reference. No code or evidence table was reused.
- usesMatched Allen mouse slice circuits do not resolve a target benefit for voltage decay similarity sci:sha256:58ac228473dc3480633fee92bf7ee192ba9edc69c29e0b7d633e0cd60f0abe69
Prior voltage-current decay comparison; our tests score each shared endpoint against reassignment separately.
Cited by
1 publicationPublic catalog entries on Sciscape.