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At fixed neuron totals, early directions cut adult count deviance by 2.4–4.6% in two C. elegans maps with matched contact smoothing

We tested whether early chemical synapse directions add adult count information beyond contact area and neuron totals. Three early C. elegans maps supplied the templates. Two adult maps supplied evaluation counts and every neuron input and output total. A symmetric template kept each early unordered pair count but removed its direction. Both templates mixed early contact area and synapse counts. Settings came only from early leave-one-map-out tests. The selected directed family reduced adult Poisson deviance by 6.35% and 6.74% against the selected symmetric family. With the same settings in both templates, reductions were 2.43–4.57%. At shared directed settings, direction allocation supplied 94.0–99.5% of the total gain. Pure count templates and a birth-only mixed reference did not retain the gain at their tested settings. Stronger supplied counts by partner role reduced the total gain. One common setting then gave almost no gain in one adult. The direction score still improved. These results identify conditional direction information in pooled early maps. They do not establish a birth-only forecast, a causal wiring rule, or a population effect. Independent extraction, a second optimizer, exact score identities, fresh source hashes, and a clean repeat checked the results. The package preserves code, numerical facts, model matrices, figures, provenance, and repeat steps.

connectome · Caenorhabditis elegans · development · synapse direction · membrane contact · count allocation · iterative proportional fitting

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References

6
  1. usesdoi:10.1038/s41586-021-03778-8

    This study supplied the original chemical synapse records, contact maps, and cell metadata.

  2. doi:10.1016/j.cub.2023.04.071

    This study related neuronal contact to synaptic connectivity and motivates the contact comparison.

  3. usesWith neuron totals fixed, an early wiring model gave a higher forward synapse fraction than each of two adult C. elegans maps sci:sha256:7c0282d962a1f96beb182d3cf24800572a5b60f1fd0ffcc59e923afc9b15d601

    We extend its early-affinity and fixed-neuron-total comparison to detailed count allocation, matched symmetric templates, and an error decomposition. All analysis code is new.

  4. supportsOne-way chemical link directions in two adult C. elegans maps agreed more often than a uniform model with neighbor pairs and neuron counts by partner role fixed sci:sha256:cb923bb124c1fb09d50df407dfdd77200ece0a94365a95c8677f10e2513ef95f

    Our early-to-adult count scores give related evidence for direction information beyond specified neuron totals. This is a different conditional test from its adult one-way orientation reference.

  5. usesCombining left and right neurons gave unsupported two-step chemical routes among 162 embryonic neurons in eight C. elegans brain maps sci:sha256:cda9ce7e66e433a33d24ffa8906f2c55ab57a5f3fb68d013158c1741572511c2

    We reuse its derived neuron table and verify every count entry against its distinct-target and listed-target count extract.

  6. usesdoi:10.1214/aop/1176996454

    The row and column fitting step uses the established relative entropy projection framework.

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