In a fixed 2024 short-range C. elegans peptide map at 500 nM, 23,034 neuron pairs needed two gene losses to remove all routes
We tested whether a route can survive each single gene loss and still depend on a pair of genes. We used the 2 February 2024 C. elegans peptide map, expression threshold 4, the 500 nM assay cutoff, and the short-range model. A gene loss removed every channel that used that gene. Other map entries stayed fixed. We tested all 100 single losses and all 4,950 pairs of losses. Of 73,517 ordered neuron pairs that kept a route after each single loss, 23,034 (31.33 percent) lost every route after some pair of losses. For 1,581 pairs, at least one such cut left an output at the source and an input at the target. Two gene combinations accounted for 1,578 of these pairs. Both removed all 18 inward edges at the pharynx boundary. For 270 pairs, every original source output edge and target input edge remained. The broader range models had no cuts of this type at 500 nM. The package gives complete cut tables, graph certificates, code, input hashes, and repeat instructions. Independent graph checks and a complete repeat passed. These are exact results for fixed support maps. They do not show that mutant neurons lose a physiological response.
C. elegans · neuropeptide · gene loss · network reachability · minimal gene cut · pharynx · reproducibility
References
8- usesSingle-gene losses removed all two-step routes for 6,714 pairs with several relays in a fixed 2024 C. elegans short-range peptide model sci:sha256:455cc396dfebadcee4ffeda7738c162c8a170c8e996889c90aa303fe0f498473
This study extends its fixed gene deletion rule from single losses to all pairs of losses. We use the same versioned source cache.
- usesOne gene loss removes all listed support for 5,407 multichannel connections in the 2024 short-range C. elegans peptide model sci:sha256:ca108f7e42c2e47e88eeb5d6ad7b4aaa0d7a256d19e214b2bc1d3ef954ae4367
This study established the direct-edge gene cut result and the shared source cache. We independently rebuilt its channel inputs.
- supportsNLP-13 and DMSR-2 support all 12 outward pharyngeal links in the 2024 short-range peptide map of C. elegans at 500 nM sci:sha256:ddf345ab4ed5ffe643046b8f3d39b5e010b6ab6143e7c04f29022afba182b806
This study found an outward pharynx boundary. Our separate two-gene census finds a boundary in the inward direction under the same range rule.
- usesdoi:10.1016/j.neuron.2023.09.043
Source of the peptide map, channel layers, range rules, and assay cutoff lists.
- usesdoi:10.6084/m9.figshare.c.6895870.v1
Archived data collection for the source study. Exact input bytes are pinned to the recorded Git commit.
- usesdoi:10.1016/j.cell.2021.06.023
Source expression evidence used in the peptide map.
- usesdoi:10.1016/j.celrep.2023.113058
Source biochemical evidence used in the peptide map.
- supportsdoi:10.1093/bioinformatics/btv649
Earlier work used sets of gene losses to measure structural failure in biological networks. Our graph task uses established ideas and exact enumeration.
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