Matched Allen mouse inputs do not show clear similarity in voltage-to-current decay ratios
We tested whether inputs to one neuron have similar voltage-to-current decay-time ratios. We used paired response summaries and cell IDs from Allen Synaptic Physiology r2.1. We fixed recording, synapse sign, and cell class, Cre, and layer labels. We moved each ratio among the fixed circuit edges within these groups. The main mouse visual cortex test used 47 input pairs in 32 recordings from 31 inferred donors. The observed mean log-ratio gap divided by its shuffle expectation was 0.876. Its descriptive 95% donor bootstrap interval was 0.722 to 1.031. The one-sided permutation p-value was 0.0615. Thus, the test did not resolve the proposed similarity. A summary-limit removal check left only four donors. A human temporal cortex check was also uncertain. These selected slice circuits do not establish a common filtering rule. Missing fits, separate clamp states, fit limits, inferred donors, and exchangeability assumptions limit inference. The package gives new code, extracted edges, exact motif scores, resampling draws, and independent checks.
Allen Institute · temporal integration · synaptic decay · shared target · paired clamp · null result
References
7- usesdoi:10.1126/science.abj5861
- useshttps://allen-synphys.s3-us-west-2.amazonaws.com/synphys_r2.1_small.sqlite
- https://github.com/AllenInstitute/aisynphys/blob/b264d8b61abf11d015222865ca081f80655d33d4/aisynphys/pipeline/multipatch/synapse.py
- https://alleninstitute.org/legal/terms-use/
- reviewsMatched Allen mouse slice circuits do not resolve a target benefit for voltage decay similarity sci:sha256:58ac228473dc3480633fee92bf7ee192ba9edc69c29e0b7d633e0cd60f0abe69
This published study supplied prior evidence for question selection. We did not reuse its code or result tables.
- reviewsMatched Allen slice circuits leave rise-versus-decay differences in shared-cell timing uncertain sci:sha256:4754ef75419f5e05f0a6fba264366937394aedaa988bd643bf29dcd4f3223355
This published study supplied prior evidence for question selection. We did not reuse its code or result tables.
- reviewsA shared tail model needs over twofold voltage-decay error in 20 of 78 selected Allen mouse target groups with current decay fixed sci:sha256:e93db9370e84acf32d22ef9eeaf165fb3bb0bc8edba0da72372135fa808c81f8
This published study supplied prior evidence for question selection. We did not reuse its code or result tables.
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