Direct wiring weights had uncertain terms in a linear test of repeated calcium responses from 46 C. elegans records
We tested whether direct wiring marks a stronger relation between source and target calcium changes across repeated activation of the same source. We used 5,080 target observations from 243 stimuli in 46 C. elegans records. A linear model removed each record/source/target mean and local time trends. It controlled source pre-response and source and target red changes. The outcome compared transformed target post and pre changes. For a contrast from zero to three chemical EM sections, the added source-response slope was +0.027. Its central 97.5% range from 1,999 record bootstrap refits was -0.125 to +0.203. For zero to two electrical sections, the slope contrast was +0.070, with range -0.201 to +0.233. All six planned checks had ranges across zero. Time removal left chemical predictor variation in 25 records and electrical predictor variation in 18. We prove why two repeats from one source can lose all source-response information under a local linear time control. The results do not establish an added direct-count association or its absence. The source readout is a network outcome, counts have no signs, and the reference anatomy came from other animals. The package preserves code, checked data, source hashes, all fits, figures and repeat instructions.
connectome · Caenorhabditis elegans · signal propagation · repeated stimulation · source response · within-pair changes · time controls · electrical synapses
References
6- usesElectrical counts had a positive adjusted term for calcium response correlation in 23 C. elegans records, but repeat coverage changed the estimate sci:sha256:5bf1bb24d74104cc01bf6fbee0c70d840ca061284763832b34ae3d52ea035dc1
We reuse its verified augmented event table and anatomical graph. We adapt its MIT channel-alignment and response-window code. Our test relates source and target changes within a repeated direction.
- usesWiring features reduced calcium response error by 1.17% beyond cell identity in a fixed test across 103 C. elegans worms sci:sha256:0e5e26303629eecdd516b6e9419e39fd70425547e36bb717a69612e587e68861
This study supplied the original selected event benchmark and response extraction rules through the immediate parent.
- usesdoi:10.1038/s41586-023-06683-4
This is the source signal propagation experiment. It already reports response variation and source-relative kernels.
- usesdoi:10.48324/dandi.001075/0.240930.1859
The fixed NWB release supplies the source and target fluorescence and stimulus tables. Its metadata states CC BY 4.0.
- usesdoi:10.1038/s41586-019-1352-7
The corrected July 2020 whole-animal map supplies the direct chemical and electrical section counts.
- doi:10.1016/j.cell.2015.02.018
Prior circuit work shows that network state can change neural signal propagation.
Cited by
1 publicationPublic catalog entries on Sciscape.
- Mean source fluorescence responses fell across repeated stimuli with equal recorded light settings in 66 C. elegans records
This related study tests source-target covariance after local time trends are removed.