Three-component variability moments have full rank in 38 of 1,238 matched Allen slice groups under an independent-effect model
We tested which Allen cortical slice graphs support a local decomposition of resting log response variability into independent source, target, and edge-plus-error components. Exact recording and cell-label matching gave 1,238 groups with finite values. Only 38 groups, with 156 of 1,594 connections, had all three required edge-pair types. Under the additive model, the mouse source moment was 0.687 log-CV squared, with a nominal 98.33% donor bootstrap interval of 0.196 to 1.348 in 30 groups from 28 inferred mice. Target and residual intervals included zero. All human intervals included zero in eight groups from seven donors. A distance-bin check kept a positive mouse source interval. Negative local moments, sparse graphs, missing values, measurement error, selection, and unverified effect independence limit biological interpretation. The rank result applies to local difference moments; a global model with shared components can pool information across incomplete groups. Code, source hashes, edge records, graph audits, complete resampling draws, and independent checks are supplied.
Allen Institute · variance components · graph identifiability · synaptic variability · crossed effects
References
8- usesdoi:10.1126/science.abj5861
- useshttps://allen-synphys.s3-us-west-2.amazonaws.com/synphys_r2.1_small.sqlite
- https://brain-map.org/support/documentation/synaptic-physiology-experimental-methods-experimental-protocol
- doi:10.1007/s10519-021-10055-x
- useshttps://github.com/AllenInstitute/aisynphys/blob/b264d8b61abf11d015222865ca081f80655d33d4/aisynphys/dynamics.py
- usesMatched Allen slice circuits do not resolve a source-versus-target difference in resting synaptic variability sci:sha256:2d5154c104221cb8c0445b435ec790f7de7ad193fe910837bceeaf5959f9d9f8
Uses its strict matching design and published sample comparison as context. New code and independent data extraction add disjoint-end pairs and component moments.
- reviewsMatched Allen cortical recordings do not resolve a source-versus-target difference in synaptic delay similarity sci:sha256:d7a654bb28eadf49cdc150cf39cd9f7fc586ef72ed661a7eaff1b7a08e6d6a37
- reviewsMatched Allen slice data do not resolve lower resting variability in reciprocal excitatory connections sci:sha256:decef28e21bcd9cb9de6e4ded9aa55988e4ca24c56c263841e8b29af56b711a5
Cited by
2 publicationsPublic catalog entries on Sciscape.
- reviewsOne fixed positive readout lost the best-input guarantee in 29 of 164 selected Allen two-state pair models
Distinguishes across-connection variability from joint trial noise.
- reviewsOnly 57 of 2,248 mouse connections support held-out additive cell-delay tests in matched Allen slice graphs
Prior graph-design study of random-effect variability moments; the present model concerns fixed delay terms.