Electrical neighbor means gave no clear added prediction gain in a ridge test across 92 C. elegans worms
We tested whether electrical neighbors help estimate one hidden calcium response in wild-type C. elegans. The reference ridge model used static wiring, cell identity, global activity, nearby cells, left/right partners, chemical neighbors, and red-channel signals. Five outer animal folds excluded every test worm from fitting. The main panel had 11,641 animal-direction means from 581 stimuli in 92 worms. Adding one electrical-neighbor response contrast reduced mean squared error by 0.23%. Its conditional 95% animal range was -0.48% to +0.95%. Error fell in four of five folds and 49 of 92 worms. The range kept fitted predictions fixed and excluded training uncertainty. This test did not establish an added prediction gain for the specified summary. It does not show that electrical connections have no functional effect. Other responses must be measured in the same event. The package preserves exact benchmark inputs, source records, code, all fitted states, control scores, figures, resample draws, and repeat instructions.
C. elegans · connectome · electrical connections · calcium imaging · response completion · animal validation
References
8- usesWith one response hidden, other cells' fluorescence reduced error by 5.4% after wiring and red controls in 92 C. elegans worms sci:sha256:dcb8d2bbd3a817f85ff5a18149ec49b7511272c5bf926ba5faac8ece96d14d30
We use its signed response table, graph fact arrays, and MIT ridge module.
- usesdoi:10.1038/s41586-023-06683-4
This study supplied the original neural stimulation and calcium measurements.
- usesdoi:10.48324/dandi.001075/0.240930.1859
This fixed release supplied the original processed recordings.
- usesdoi:10.1038/s41586-019-1352-7
The benchmark graph uses the corrected July 2020 anatomical workbook.
- doi:10.1016/j.cub.2022.06.039
- doi:10.1101/2024.09.22.614271
- Electrical links in three C. elegans maps had positive calcium correlation terms after behavior and wiring controls in 21 worms sci:sha256:b09f3c1a6080d1de06e526c73820f221c72e197b652af1ae224a632b69bafc1e
This prior study tested electrical wiring and spontaneous coactivity.
- Electrical counts had a positive adjusted term for calcium response correlation in 23 C. elegans records, but repeat coverage changed the estimate sci:sha256:5bf1bb24d74104cc01bf6fbee0c70d840ca061284763832b34ae3d52ea035dc1
This prior study tested electrical wiring and shared responses across repeated stimuli.
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1 publicationPublic catalog entries on Sciscape.
- Signals from other cells reduced prediction error before and after stimulation in fixed ridge tests across 90 C. elegans worms
This earlier study tested electrical-neighbor completion. It motivated the distinct control before stimulation used here.