At a quality cutoff of 0.3, depth reduced full-field waveform error by 5.4% in 30 mice; a cutoff of 0.5 gave no clear gain
We tested whether bipolar terminal depth helps predict full-field glutamate responses when local responses are known. We used the Franke et al. main processed file v1. The primary sample had 6,185 release regions from 145 scans and 30 date-and-mouse groups. Both response quality indices were at least 0.3. Each outer test excluded one complete mouse group. All model choices used other groups. Adding smooth depth terms and products to a quadratic local-waveform model reduced mean squared error by 5.42%. The descriptive 95% mouse bootstrap interval was 2.78% to 7.69%. Twenty groups had lower error. A broad depth split reduced error by 3.34%. Fine depth gave an uncertain 2.15% reduction beyond that split, with an interval from -0.19% to 4.16%. The planned quality-0.5 refit used 995 regions from 25 groups. Its depth model increased error by 5.36%; its reduction interval was -10.59% to 0.51%. A later check of fixed primary fits on those regions also gave no clear gain. The package preserves code, compact inputs, predictions, figures, source hashes, and repeat instructions. All 29 source rebuild and result comparisons matched exactly. These results show a small prediction gain under one quality rule. They do not establish a stable fine-depth benefit, a causal depth effect, or individual inhibitory connections.
retina · bipolar cells · structure and function · terminal depth · surround response · glutamate · validation across mice
References
2- usesdoi:10.1038/nature21394
We use its glutamate measurements and depth definitions. We test prediction across excluded mice without the anatomy-guided cluster labels.
- usesdoi:10.5061/dryad.rs2qp
We use the main processed file v1 in the 2018-06-14 release, from Zenodo record 5052889. Source hashes identify the exact bytes.
Cited by
4 publicationsPublic catalog entries on Sciscape.
- Removing one of four mouse records reduced the mean Gabazine-coded change in retinal response correlation from 0.100 to -0.002
Prior work tested terminal depth as a predictor of wide-field output from local output. This study adds a matched drug subset and mouse-level coverage checks.
- In one mouse retina, bipolar release kinetics by layer depth ranked the sustainedness of 20 On ganglion cell types (ρ 0.77) but not of 13 Off types (ρ 0.05, below depth-scrambled maps)
Related use of the Franke terminal depth for BC responses in the same data file.
- usesWith fixed fits in 73 mouse retinal scans, adding depth gave a larger error decrease when at least one response quality index was below 0.5
We use its fixed forecasts and processed response arrays. We test its unresolved quality and coverage limit within the same scans.
- usesWith fixed models, excluding a scan with a repeated trace reduced depth gain from 21.5% to 5.4% in seven mouse retinal drug records
We reused its feature family and weighted ridge method. The new test excludes every drug-coded mouse from all fitting.