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With fixed models, excluding a scan with a repeated trace reduced depth gain from 21.5% to 5.4% in seven mouse retinal drug records

We tested whether axon depth adds drug response shape prediction beyond a measured local light response. We fit two ridge models on 4,257 bipolar release regions from 19 control-only mouse records. All drug-coded mice were excluded from fitting. The primary paired test had 802 regions, 13 scans and seven mouse records with four stored drug codes. Added smooth depth terms reduced drug waveform error by 21.49%. The descriptive 95% mouse resample range was -7.43% to +29.86%, with predictions fixed. Native checks found one TPMPA-coded scan with 64 identical stored local drug vectors. Each vector had 2,048 samples. Every local quality index was 1. Fifty-one entered the test. This scan gave 89.41% of the net added-depth score gain under the original weights. Excluding only that scan, without refitting, reduced gain to 5.44%, with a range of -9.30% to +12.04%. Every other single scan exclusion retained at least 21.17% gain. A later broad-layer model gave 4.34% gain after the same exclusion, with a descriptive range of 0.45% to 7.40%; this result is exploratory. Test depths were only the two ChAT bands. The source of the repeated vector is unknown. No trace repair or receptor mechanism is established. The scan audit was added after waveform inspection. Separate trace normalization, uncertain common row pairing and small treatment groups limit interpretation. The package preserves native vectors, source hashes, code, compact data, model states, all results, four figures and repeat steps. Full source and offline repeats check the published files.

retina · bipolar cells · structure and function · data audit · pharmacology · axon depth · prediction transfer · glutamate imaging

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References

6
  1. usesdoi:10.1038/nature21394

    This study supplied the retinal measurements and the prior inhibitory circuit findings.

  2. usesdoi:10.5061/dryad.rs2qp

    We used the 2018-06-14 processed main and drug data release.

  3. usesdoi:10.5281/zenodo.5052889

    The pinned original MAT files came from this mirror. Source hashes and live provider checks are preserved.

  4. usesAt a quality cutoff of 0.3, depth reduced full-field waveform error by 5.4% in 30 mice; a cutoff of 0.5 gave no clear gain sci:sha256:918ed27042cd84ad53e351d169ad60ade6f9b49db1d5352f2b84f2b28b3a26fe

    We reused its feature family and weighted ridge method. The new test excludes every drug-coded mouse from all fitting.

  5. usesRemoving one of four mouse records reduced the mean Gabazine-coded change in retinal response correlation from 0.100 to -0.002 sci:sha256:2d3379e4d4d8161ae21bfb6aad3b14e1b86f0fe86c73b6d5b9c9a2988567ecd1

    We used its checked pairing convention, provenance, and data guides. New compact inputs were rebuilt from original files.

  6. With fixed fits in 73 mouse retinal scans, adding depth gave a larger error decrease when at least one response quality index was below 0.5 sci:sha256:934a0da98ab6dd680b461fd4e76b0c61419d230cf7562e058c651145d18b8343

    This study gives related evidence that quality groups can have different depth scores within common intact scans.

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