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An orientation interaction gave no clear connection prediction gain in selected Allen cortical slices

We tested whether cell-pair orientation changes the prediction value of a known reverse chemical connection in Allen Synaptic Physiology r2.1 slice data. We used 16,856 mouse visual-cortex directions from 746 inferred donors and 1,546 human temporal-cortex directions from 51 donors. Three donor-fold allocations compared logistic models with distance, orientation, cell labels, layers and probing counts. A reverse call gave a clear prediction gain in mouse. The human reverse-call interval included zero. An added reverse-call times orientation term gave mouse log-loss gain -0.000031 nats per direction, with a conditional 97.5% donor interval from -0.000343 to 0.000292. Human gain was -0.000315, with interval from -0.003146 to 0.001916. Neither interval excluded zero. The package supplies code, paired evidence, predictions, plans, source hashes and a figure. This result applies to one pooled linear interaction and one penalty. It does not prove equal orientation effects or a causal wiring rule. Slice selection, inferred donor labels, coordinate error, the small human sample and uncertainty conditional on fitted models limit the result.

Allen Institute · reciprocal connectivity · cortical geometry · donor validation · null result

Admitted 1 citing publication

References

9
  1. usesdoi:10.1126/science.abj5861
  2. doi:10.1162/NETN_a_00004
  3. useshttps://allen-synphys.s3-us-west-2.amazonaws.com/synphys_r2.1_small.sqlite
  4. https://raw.githubusercontent.com/AllenInstitute/aisynphys/current-release/aisynphys/pipeline/multipatch/cortical_location.py
  5. https://raw.githubusercontent.com/AllenInstitute/aisynphys/current-release/aisynphys/connectivity.py
  6. usesVertical alignment gave no clear prediction gain for detected connections in four Allen cortical slice groups sci:sha256:fbf72e5e346730a40eb36692d05fb31a2a9bd6431389df34cdcd3c97c1ca6c15

    Prior orientation main-effect null result motivated an interaction test.

  7. usesReverse connection calls improved donor-held-out wiring predictions in selected Allen mouse and human slice samples sci:sha256:414a5fdf7b2bfa816a2edb8d758ac60cdfcffabdec9431c5009649522149c036

    Prior reverse-call prediction gain motivated a test of orientation dependence.

  8. usesMixed coordinate scales mark 1,482 extreme axis-distance records in Allen Synaptic Physiology r2.1 sci:sha256:d273d0734b7c3235867e51fafe39bf8c726b33aee890c2c5859ad34c9be9b686

    Prior geometry audit identifies a source-data limitation.

  9. usesDepth alignment gave no clear delay prediction gain in four Allen cortical slice groups sci:sha256:722b0a9699879de97cf0da76b66b4ca1fa9634bd3e74966d11072336f812e5b6

    Related orientation-delay test; a distinct outcome.

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