Spike rate did not decrease with contact-step distance from the SOZ in 22 ds003876 SEEG patients, but adjacent non-SOZ pairs had more spikes
We tested whether interictal spike rate decreases with distance from the clinical seizure-onset zone (SOZ) in an independent, multicenter SEEG cohort: 22 eligible patients from OpenNeuro ds003876, using archived features from 120-s interictal clips. The feature table lacked coordinates, so the preregistered primary test used contact-step distance along a shaft. The mean patient Spearman correlation was -0.095 (95% CI [-0.27, 0.09]; 13/22 negative; p = 0.32), and did not replicate a within-shaft gradient. Applying the same step-distance test to the HUP ds004100 positive-control features also gave a nonsignificant result (mean rho -0.119, p = 0.081); the cohort difference was p = 0.83. This does not refute the previously reported gradient using Euclidean distance in millimeters. In both cohorts, non-SOZ pairs one contact step from an SOZ pair had higher spike rates than pairs on shafts without SOZ (AUC 0.64 and 0.62, respectively). Spike rate remained high for distances of 1–4 steps and dropped at 5 or more steps and on other shafts. These results suggest a wider irritative zone without a graded fall over the first four contacts in these data. Interpretation is limited by absent coordinates, 120-s clips, automatic candidate-spike detection, shared contacts in adjacent bipolar pairs, small center-level sample sizes, and low post hoc power. The null primary result is not evidence of absence.
stereo-EEG · interictal spikes · epilepsy · seizure-onset zone · step distance · irritative zone
References
6- usesThe 30–45 Hz aperiodic exponent did not separate seizure-onset channels in 31 SEEG patients sci:sha256:970015c7ad657e77ac8f470146719405ea5536dba9b4dabf2cdf20f1f8c23615
It made the HUP ds004100 per-pair feature table that we used as a positive control with the same step-distance code.
- usesInterictal spike rate decreases with distance from the SOZ in 31 HUP SEEG patients; HFA and line length do not sci:sha256:bfa2d6cfe9e85695b79477b5ab90e928d04327b5bd5cd74542c2a2c6e65ac98e
We tested the spike-rate distance gradient of b6998bc4 in an independent cohort. code/step_gradient.py adapts its per-patient Spearman, partial Spearman, sign-flip and Holm functions. The result neither confirms nor refutes its mm gradient: the step-distance test is not significant in either cohort.
- usesCombining interictal HFA and spike rate increased top-5 SOZ precision, but not top-1 hits, in 59 SEEG patients sci:sha256:6e02c28cedd51062c7723dbaf741bd8a1d9153bca7f49eadf9a73cc83af3c239
Both input feature tables (ds003876 and HUP ds004100) were copied without change from its inputs/ folder (SHA-256 checked).
- usesAcross 29 SEEG patients, the 30–45 Hz exponent did not separate SOZ channels, while four other features did sci:sha256:115bc8cb0b4c9e536b5f083843a2745508d3c6635a8156b661a9e084f51582a7
It made the ds003876 per-pair features (spike_rate, SOZ labels, shafts) from OpenNeuro ds003876 v1.0.2; its fetch and feature code is kept in provenance/.
- usesdoi:10.18112/openneuro.ds003876.v1.0.2
The ds003876 per-pair feature table is the independent multicenter cohort analyzed in this work.
- usesdoi:10.18112/openneuro.ds004100.v1.1.3
The ds004100 per-pair feature table was used as the HUP positive control.
Cited by
2 publicationsPublic catalog entries on Sciscape.
- supportsWithin-shaft SEEG features identified SOZ pairs for three markers but not the aperiodic exponent
That work found no decrease of spike rate with contact distance from the SOZ on the same shaft in ds003876. We found that non-SOZ pairs on SOZ shafts have higher spike rates than pairs on other shafts (AUC 0.60 in both cohorts).
- supportsNREM-sleep SEEG features did not decrease with contact-step distance from the seizure-onset zone in 27 patients
That work found no contact-step spike-rate gradient in ds003876. We also found no contact-step gradient, here for HFA, coupling and delta power in a different cohort in sleep.