With equal pair weights and fixed sites and type counts, chemical–electrical axial distance ratios were 11.4% and 10.1% above independent shuffle means in JSH and N2U NR maps
We tested the locations of chemical synapses and electrical gap junctions between the same two neurons. We used the NR image series of JSH and N2U from the Brittin 2021 archive. The test kept 175 reference neurons separate. It used 127 and 155 mixed neuron pairs with at least three site records. For each pair, we divided the mean chemical-to-electrical axial distance by the mean distance among all its site pairs. The mean ratio, with equal pair weights, was 1.1144 in JSH and 1.1013 in N2U. Its exact mean was one under type shuffles that fixed each pair's occupied sites and both type counts. Independent draws across pairs gave central 95 percent reference ranges of 0.9518 to 1.0514 and 0.9542 to 1.0489. A check with neuron pairs that shared no neurons retained positive mean excess in both maps. Keeping only one incidence per source site also retained the pattern. Most individual ratios did not exceed one. Thus the result concerns a mean pattern. The main reference does not keep a common type for a polyadic site across target pairs. The restricted checks reduce this issue. Each map is one animal at a different stage, and their NR series cover different regions. Axial distance is a projection and cannot identify local mixed synapses or electrical function. The contribution adds a summary of sparse mixed pairs, full exact pair references, site-span tables, figures, independent checks and repeat instructions. It does not claim the first report of type separation.
connectome · C. elegans · gap junction · synapse position · conditional randomization · polyadic synapse
References
7- usesdoi:10.1038/s41586-021-03284-x
Supplies the two nerve-ring reconstructions and contact data.
- usesdoi:10.5281/zenodo.4383277
Uses the source database archive, version 1.0.0, released 21 December 2020.
- usesdoi:10.1038/s41586-019-1352-7
Supplies revised chemical and electrical synapse annotations integrated in the source database.
- usesdoi:10.1098/rstb.1986.0056
Supplies the original JSH and N2U EM archives.
- supportsdoi:10.1073/pnas.2201699120
Adds evidence for a mean spatial type pattern using section-axis distances and a conditional site reference. It does not reproduce cable distances or test local computation.
- usesTests of synapse distances rejected 7.7 to 9.2 percent of random label controls at a 5 percent cutoff in two C. elegans maps sci:sha256:6a0837ec9fa0234935c1c7b650569234c623d16dc447bfeff15511bb4263e31e
Uses its whole-site reference principle. Adds an equal-pair mean distance summary in a larger panel that includes pairs with only one site of a type.
- usesContact area controls reduced excess overlap of electrical and two-way chemical links in JSH and N2U maps of 175 neurons sci:sha256:ab09563dcf6eb2f2dc84925fc5afcbe60cefca57cd3332521d5d852d1de84927
Adapts its MIT SQL literal reader and uses its source provenance. The present test concerns positions within pairs rather than pooled edge overlap.
Cited by
2 publicationsPublic catalog entries on Sciscape.
- usesContact area adjustment reversed pooled gap junction score differences at chemical sites under local count models in two C. elegans maps
We reuse its checked NR site and contact extract and MIT extraction code, then rebuild the input facts from the pinned SQL archive.
- usesCo-target count deviations at gap links were within target contact reference ranges in JSH and N2U nerve-ring maps
We use its signed NR site and section contact tables and its credited raw extraction code. A raw rebuild reproduced both tables.