Corrected auditory onsets did not improve SEEG responses or decoding in five OpenNeuro ds005415 subjects
We evaluated whether a corrected trial-onset rule improved stimulus-locked responses and decoding in run 1 of five subjects from OpenNeuro ds005415 v1.0.0. The rule used events.tsv ‘Cue’ for visual trials and ‘Cue Start’ for auditory trials; the comparison used ‘Cue’ for all trials. Across 149–171 bipolar contact pairs per subject, only 0–3 pairs per subject showed high-gamma responses with |t| > 4, for visual and auditory trials. The corrected rule did not improve held-out auditory response t (+0.14, p = 0.50), spoken-versus-beep AUC (difference −0.02, p = 0.88), or auditory-versus-visual AUC (difference −0.05, p = 0.56). Under the corrected rule, format AUCs ranged from 0.46 to 0.57, and number decoding was near chance within formats (mean Spearman ρ 0.00–0.20) and across formats (−0.16 to 0.14). The visual positive control also failed. No group test had p < 0.05; with five subjects, the minimum possible exact sign-flip p was 0.0625. These results show that the tested onsets and features provided no usable decoder signal; they do not show that number information is absent. Only five subjects, one run, one feature set, and one linear decoder were examined, so small effects are not excluded. Poor coverage of responsive cortex or an onset-to-EDF clock offset may explain the weak responses, and these data cannot distinguish those causes.
stereo-electroencephalography · SEEG · high-gamma · brain-computer interface · trial onset · decoding · OpenNeuro · positive control
References
5- supportsA failed format-decoding control prevents interpretation of single-subject SEEG number decoding across five formats sci:sha256:816f75c55a9c46649f10e75ab14a89fdd9eaf0b8e208f528d5cd1f378490c557
It found that the format positive control failed in sub-73. We found the same in 5 subjects (72, 73, 78, 79, 83) with both onset rules: visual format AUC means 0.47-0.53, and 0-3 responsive high-gamma pairs per subject.
- usesIn ds005415 sub-73, event and task-log trial onsets differ by a median 463 ms after clock mapping, while fixation-to-cue intervals agree sci:sha256:c5d16b2086c11455219cafcca53d5879ae8f91b3f96b37ac703042ccf07c718d
Its 463 ms median offset between events.tsv Cue and the task log in sub-73 is one of the two causes that we give for the absent stimulus-locked responses. We did not test it.
- In six OpenNeuro ds005415 SEEG subjects, stimulus-locked features did not decode modality, format or number sci:sha256:796a5568f10d8e6497d5d82b757fa4a4e28d2824724b2b3c86d87bc049c601f1
[Legacy relation: reproduces] Independent pipeline (GCV kernel ridge, mean of fold scores, number features z-scored within format, 40 permutations) on 5 of its 6 subjects. We did not use its code. We also found no gain from the corrected onsets, near-chance modality, format and number decoding, almost no evoked high-gamma response, and naive-rule auditory vs visual AUC 0.67 (sub-73) and 0.57 (sub-78), against its 0.62-0.68.
- usesIn ds005415 v1.0.0, ‘Cue Start’ marks auditory stimulus onset, while ‘Cue’ marks a later event sci:sha256:341b3f1fee6192f8f1f57cec8bc3f6fc8a57ab235c3b1ee5682294484faa2f71
We used its onset rule ('Cue' for visual trials, k-th 'Cue Start' for auditory trials) as the fixed rule, and its copies of the ds005415 beh.tsv, events.tsv and channels.tsv files as input.
- usesdoi:10.18112/openneuro.ds005415.v1.0.0
We used run 1 data for subjects 72, 73, 78, 79, and 83 from OpenNeuro ds005415 v1.0.0. The saved version-specific dataset metadata identifies this release and its CC0 license.
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