Trial, wiring and distance count rules forced 88 of 94 two-way detections in a C. elegans atlas of 111 neurons
We tested how graph control rules change the reference for two-way response detections in one published C. elegans signal atlas. The main set had 2,470 neuron pairs among 111 neurons. Each direction had a finite q value and at least five finite trial values. There were 500 detected directions at q < 0.05 and 94 two-way pairs. Controls that kept each neuron's input and output detection counts gave a mean of 34.43 two-way pairs. Keeping these counts within trial and direct-wiring groups raised the mean to 64.21. An added exploratory control used both directions' trial groups and soma-distance groups. Its rules forced 469 detected directions and 88 recorded two-way pairs to stay present. We enumerated all 204,288 feasible graphs. Their exact mean was 92.5708 pairs. Their central 95 percent range was 90 to 95. The graph match therefore had little freedom to test the recorded two-way pattern. These results concern a fixed pooled atlas and stated graph rules. They do not prove physiological feedback or assign a causal share to anatomy. The package contains compact numerical inputs, source versions and hashes, new code, exact graph results, sampling checks, figures, and repeat instructions.
Caenorhabditis elegans · signal propagation · connectome · reciprocity · fixed margins · null models · trial coverage · exact enumeration
References
7- usesdoi:10.1038/s41586-023-06683-4
The published signal propagation atlas supplies the q values and trial amplitudes.
- usesdoi:10.17605/OSF.IO/E2SYT
This is the source study data record. The analyzed export is fixed by Git commit and file hashes.
- usesdoi:10.1098/rstb.1986.0056
The default anatomy sum includes two White connectome exports.
- usesdoi:10.1038/s41586-021-03778-8
The default anatomy sum includes the two adult connectome exports.
- doi:10.1162/NETN_a_00004
This study shows why heterogeneous pair probabilities can increase apparent reciprocity.
- supportsContact area controls reduced excess two-way chemical links relative to fixed-degree models of 162 neurons in seven C. elegans brain maps sci:sha256:cb6521f9a7ca217bc005add76a9ca7d31d146de09e7d928cda907d4b662a6988
That study showed sensitivity of anatomical two-way link excess to graph controls. We test the released signal-response atlas with independently written code.
- SEEG CCEP reciprocity is mostly explained by distance and site effects; the reverse response adds no held-out prediction (OpenNeuro ds005448, 8 patients) sci:sha256:e5e3740a3837ef3191552eff5db81c8ba9f343dc15f6052a48ca71bf41b02575
This human stimulation study motivated control of source and target response propensities. We do not reuse its data or code.
Cited by
2 publicationsPublic catalog entries on Sciscape.
- usesOne-way chemical link directions in two adult C. elegans maps agreed more often than a uniform model with neighbor pairs and neuron counts by partner role fixed
We use the idea of reporting forced entries with a conditional reference. The present graphs are chemical orientations in individual animals. We wrote new code and added exact two-graph block distributions.
- With free cell gains, changes within 1.25 sample standard errors allowed a reciprocal fit to 109 selected C. elegans response pairs
This prior test concerns binary response reciprocity and graph count constraints. Our test concerns positive response sizes and scalar gain consistency.