Adding the second 50 Hz response cut late voltage test error by 28% in 960 mouse cortical connections with separate donor folds and an asinh score
We tested whether the second response to 50 Hz stimulation helps to predict later transmission along a detected cortical connection. We used Allen Synaptic Physiology r2.1 small. The main sample had 960 mouse connections from 396 inferred donors. Each donor stayed in one outer validation fold. Nested ridge tests compared cell labels, distance, age, project, and the first response with the same predictors plus the second response. The late target was a fitted voltage summary for pulses 6 to 8. An asinh score with a 0.1 mV scale gave a 28.4% error reduction when the second response was added. A paired donor bootstrap gave a central 95% range of 20.4 to 36.0%. This range holds the fitted predictions fixed. Fits at two other voltage scales and in raw mV also gave lower error. A separate human fit gave a 47.8% reduction in 111 connections from 32 donors. Early and late summaries can share accepted pulse trains and fitting assumptions. The result does not establish prediction of new independent trials or identify a release mechanism. The package preserves code, source hashes, selection, donor groups, folds, all predictions, bootstrap draws, figures, and repeat instructions. A full replay reproduced all 32 numerical output files byte for byte.
synaptic transmission · short-term plasticity · cortical connectivity · Allen Synaptic Physiology · grouped validation · burst response
References
4- usesdoi:10.1126/science.abj5861
We analyze measured scalar synaptic response amplitudes and cell metadata from Allen Synaptic Physiology r2.1 small.
- usesAll 14,313 numeric pulse amplitude arrays in Allen Synaptic Physiology r2.1 were flat, and a shared list reproduced the loss of pulse order sci:sha256:989c63646cdf418f9663cb5767fc90245c7cf15182f746f5bef2e1e419d97342
Its audit identified the order error in the full released pulse arrays. We use dedicated scalar fields and avoid those arrays.
- Recording and cell class controls left no clear added agreement in initial 50 Hz responses of 144 mouse reciprocal pairs sci:sha256:68f047b73392ee440a4b219b558a0865646d318aefb1f1a5714bfcad248cb881
This related study tested response agreement across reciprocal directions in the same source release. Our test instead predicts late summaries from early summaries.
- With experiment and cell labels fixed, shared targets gave no clear extra similarity in initial 50 Hz changes in 70 mouse and 39 human cortical connections sci:sha256:742cd845e01f41bf64da8e52834b49d13b2d9a48d7bc0b00b441871d31ab4523
This related study tested similarity among connections with shared targets. Our question and model test are different.
Cited by
2 publicationsPublic catalog entries on Sciscape.
- Resting variation gave no clear late voltage prediction gain after strength controls in ridge tests of 993 mouse cortical connections
[Legacy relation: reproduces] An added control repeats the direction of the second-response prediction gain on the same source with different selection, baseline features and donor weighting. This is not an independent biological replication.
- usesSoma distance reduced delay error but gave no clear 50 Hz change gain in fixed tests of mouse cortical connections with separate donors
We use its source scalar definitions and donor-audit context. Our question tests soma distance for normalized response change. We do not reuse its code or claim independent source data.