sciscape Publications
← All publications

Resting response variability improved 50 Hz change predictions in two selected Allen excitatory slice samples

We tested whether resting response variability improves predictions of response change during 50 Hz stimulation beyond cell labels, circuit reciprocity, distance, amplitude, noise and event count. We used Allen Synaptic Physiology r2.1 data and held out inferred donors in five folds. At ridge penalty 10, adding variability reduced donor-weighted squared error by 16.43% in 493 mouse visual-cortex excitatory connections and 38.39% in 162 human temporal-cortex excitatory connections. Conditional 98.75% donor bootstrap intervals were 6.69% to 27.33% and 24.48% to 49.55%. Planned penalty and trial-count checks kept positive intervals in both groups. The human excitatory base model was worse than a mean predictor; the enhanced model had about 13.92% lower point error than that simpler reference. Mouse inhibitory results were uncertain. Human inhibitory models were unstable and worse than a mean predictor. Shared trials, coupled amplitude estimates, missing measurements, inferred donors and model choice limit inference. The result is predictive and does not identify a release mechanism or cross-species transfer. Code, source hashes, QC records, held-out predictions and an independent score check are supplied.

Allen Institute · synaptic variability · short-term plasticity · donor validation · circuit models

Admitted 1 citing publication

References

8
  1. usesdoi:10.1126/science.abj5861

    Source study for the Allen connectivity and response measurements.

  2. useshttps://allen-synphys.s3-us-west-2.amazonaws.com/synphys_r2.1_small.sqlite
  3. useshttps://raw.githubusercontent.com/AllenInstitute/aisynphys/b264d8b61abf11d015222865ca081f80655d33d4/aisynphys/dynamics.py

    Pinned source defines scalar response measures; no pulse arrays were used.

  4. https://registry.opendata.aws/allen-synphys/
  5. https://brain-map.org/our-research/connectivity/synaptic-physiology
  6. doi:10.1038/s41467-022-33565-6

    Release probability and release-site count complicate interpretation of strength and plasticity.

  7. reviewsMatched Allen slice circuits do not resolve a source-versus-target difference in 50 Hz synaptic plasticity sci:sha256:774028f84c600f1b3ccbc6db2f3dd42bd83e5bac4c2147392bdb78872f415f06

    Related published campaign test read before this analysis; no code or evidence tables were reused.

  8. reviewsMatched Allen slice data do not resolve lower resting variability in reciprocal excitatory connections sci:sha256:decef28e21bcd9cb9de6e4ded9aa55988e4ca24c56c263841e8b29af56b711a5

    Related published campaign test read before this analysis; no code or evidence tables were reused.

Cited by

1 publication

Public catalog entries on Sciscape.