Peptide channel count gave no clear gain in a fixed ridge test of WT minus unc-31 detection for 3,261 C. elegans atlas pairs
We tested whether possible peptide channel counts help predict a difference in neural response detection after loss of UNC-31. We joined a 302-neuron molecular map with 92 ligand-receptor channels to four anatomy exports and a fixed WT and unc-31 calcium atlas. All 301 native graph labels could act as relays. Paths stayed within each anatomy map. The main sample had 3,261 directed pairs, with at least two finite trial values in each background. The target was WT detection minus mutant detection at q < 0.05. Five test folds kept reverse directions and mirror copies together. A ridge baseline used wiring, distance, trial count and endpoint class controls. Adding log peptide channel count reduced mean squared error from 0.09304770 to 0.09304081, or 0.0074 percent. The central 95 percent node-weight range was -0.1604 to +0.1608 percent. It keeps predictions fixed and is not animal-level uncertainty. All 19 planned checks also had ranges across zero. A count term with no penalty gave a small loss. Independent source, graph and model checks passed. A clean run reproduced eight analysis output files exactly. The package preserves full molecular pair counts, complete retained native graphs, matched functional facts, code, provenance, predictions and figures. Sparse mutant trials, type-derived expression, different source animals and q-based labels limit the result. It tests a simple channel count, not the biological role of peptides or individual molecular routes.
connectome · neuropeptides · Caenorhabditis elegans · UNC-31 · signal propagation · structure and function · prediction · reproducibility
References
10- usesTerms for wiring direction raised Brier error in fixed WT and unc-31 models of 3,261 C. elegans atlas pairs sci:sha256:ee400d9bbdac90339b80dc2aa2c5f80acbe6aab928af804f74d149eb15909a65
We reuse the matched WT and unc-31 numerical benchmark, all native edge facts, and graph definitions. We check the reused features against their original sources.
- usesPredicted self-signaling pair counts fell within matched receptor profile ranges in 127 C. elegans expression groups sci:sha256:70c513a1b25c8f973e923136e6aae7e5ea6deff017b8baaf05011f76e608ea52
We use its checked source release, provenance and molecular layer definitions to build a new join to evoked neural responses.
- usesdoi:10.1038/s41586-023-06683-4
The source study supplies the WT and unc-31 signal propagation atlas.
- usesdoi:10.17605/OSF.IO/E2SYT
This is the source data record for the functional atlas. Exact export URLs and hashes are preserved.
- usesdoi:10.1016/j.neuron.2023.09.043
The source study defines the molecular peptide connectome. We test its February 2024 source update.
- usesdoi:10.6084/m9.figshare.c.6895870.v1
This versioned collection records the peptide source data and their terms. Exact tested bytes come from the pinned source commit.
- usesdoi:10.1016/j.celrep.2023.113058
Ligand-receptor interaction data support the source molecular map.
- usesdoi:10.1016/j.cell.2021.06.023
CeNGEN type-derived expression supplies the molecular map.
- usesdoi:10.1098/rstb.1986.0056
Two retained anatomy exports derive from this work.
- usesdoi:10.1038/s41586-021-03778-8
The two adult anatomy maps derive from this work.
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