Terms for wiring direction raised Brier error in fixed WT and unc-31 models of 3,261 C. elegans atlas pairs
We tested whether wiring direction adds more response prediction information in unc-31 mutants than in WT. We used the same 3,261 ordered pairs from a fixed C. elegans signal propagation atlas. Four anatomy exports supplied a graph with 301 native neuron names. The baseline logistic model used symmetric wiring, electrical counts, two-step paths, measurement count, distance and endpoint cell effects. The full model added direct and two-step direction terms. Opposite directions and mirror copies shared five fixed test folds. Adding direction raised WT Brier error from 0.057062 to 0.057309 and unc-31 error from 0.043006 to 0.043160. The gain difference, normalized by detection variance, was -0.000096. Its conditional central 95% network reweighting range was -0.00936 to +0.01016. All 14 planned mutant cases gave small losses. One of ten later fold assignments gave a very small mutant gain. The software recovered a strong artificial direction signal in all 20 control runs. These are tests on withheld atlas entries, not separate animals. Sparse mutant measurements, detection labels and cross-animal anatomy limit the result. The package preserves code, numerical input tables, complete native edge facts, source hashes, predictions, model states, checks and figures. Fresh-source and offline builds reproduced the numerical results.
connectome · Caenorhabditis elegans · signal propagation · unc-31 · directionality · structural connectivity · calcium imaging · prediction benchmark
References
7- usesdoi:10.1038/s41586-023-06683-4
We use the signal propagation atlas and extend the reported WT and unc-31 anatomy comparison with a matched directional prediction test.
- usesdoi:10.17605/OSF.IO/E2SYT
Original functional data record. Exact analysis bytes are identified by the pinned WormNeuroAtlas export and SHA-256 hashes.
- usesdoi:10.1098/rstb.1986.0056
White whole and L4 anatomy exports supply chemical and electrical counts.
- usesdoi:10.1038/s41586-021-03778-8
Adult maps 7 and 8 supply chemical and electrical counts.
- usesA synapse count rule selected the larger absolute calcium response in 140 of 310 C. elegans atlas pairs with at least five trials per direction sci:sha256:8415f4434c1d662db2900bdc7768e73baa29298f62a5ac491f42f08e0f9cca2a
We extend its WT direction question to matched WT and unc-31 detection models. No prior source code is copied.
- Stable chemical connections across eight C. elegans connectomes did not propagate optogenetic signals more often than variable connections at matched adult synapse count sci:sha256:5cbb4c1917dff79c9e9f17c6ff6ae5d0ba556de73d1a96c2f13df319c7fef4d0
Prior analysis of connection stability and functional response detection motivates controls for count, electrical wiring and bilateral identity.
- doi:10.1103/6wgv-b9m6
Prior comparison of anatomical and signal propagation network structure.
Cited by
4 publicationsPublic catalog entries on Sciscape.
- usesPeptide pair counts raised ridge test error by 0.20% for WT and unc-31 response differences in 1,342 C. elegans atlas pairs
We reuse and independently audit its matched assay facts, complete native neuronal edges, and node panel.
- Wiring profile gains changed sign across five ridge splits of two-way response differences in 1,855 C. elegans atlas pairs
Prior direction detection results set the scope of our new continuous-response test.
- usesWith free cell gains, changes within 1.25 sample standard errors allowed a reciprocal fit to 109 selected C. elegans response pairs
We compare all 10,231 native graph facts with this signed benchmark and follow its source count and AWC identity audit. The new extractor and diagnostic code are independent.
- usesPeptide channel count gave no clear gain in a fixed ridge test of WT minus unc-31 detection for 3,261 C. elegans atlas pairs
We reuse the matched WT and unc-31 numerical benchmark, all native edge facts, and graph definitions. We check the reused features against their original sources.