With local counts fixed, shared synapse sites had higher adjusted calcium coactivity scores in two adult C. elegans maps
We tested whether target groups at chemical synapse sites carry information about calcium coactivity beyond weighted connections. We used all retained neuronal sites in two adult C. elegans brain maps and a fixed activity table from 21 freely moving worms. The common panel had 54,396 animal-pair rows, 8,038 named pairs and 134 neurons. All 180 graph labels entered the structural calculations. Random groups kept every connection count, site size and target count within 2 micrometre cubes fixed. Recorded groups had higher adjusted coactivity scores in both maps. Upper reference tails from 2,000 draws were 0.0040 and 0.0010; Holm values were 0.0040 and 0.0020. Shifting the spatial grid and merging records at the same source node kept positive gaps. A reference without spatial constraints gave no clear excess. Class weight ranges included zero in both maps. For classes excluded from training, adding the site score reduced mean error by 0.477% and 0.389%, with 95% animal bootstrap ranges of 0.077% to 0.907% and -0.139% to 1.139%. Only 13 and 10 of 21 animals improved. Thus the site groups carry a small conditional association in this panel. The result does not establish shared release or a general class effect. Both maps use the same functional data. The package preserves code, source hashes, graph summaries, the joined panel, predictions, random scores, figures and repeat steps. An offline replay and a full source rebuild checked the results.
connectome · polyadic synapse · shared site · calcium activity · C. elegans · structure and function · conditional randomization · reproducible benchmark
References
11- usesElectrical links in three C. elegans maps had positive calcium correlation terms after behavior and wiring controls in 21 worms sci:sha256:b09f3c1a6080d1de06e526c73820f221c72e197b652af1ae224a632b69bafc1e
We reuse its verified numerical activity table, behavior projections, exact neuron IDs and Cook controls for 21 baseline recordings.
- usesTarget pair site counts agreed beyond fixed 2 micrometre local counts in two adult C. elegans brain maps sci:sha256:d2d08f36aabe12af4b5fcffb6d3aaa4aaf9460c29a72404d9cf2b6359d03e6a1
We reuse its MIT C++ fixed-margin site sampler, without code changes, to produce target-pair counts.
- With local counts fixed, shared sites had closer transformed calcium responses in one of two adult C. elegans maps sci:sha256:9b300b25c2c825a7116f9229dafe624fc59ac5ca3786e332b815262ed6275a5e
This prior study tested shared sites against responses to source activation. Our study tests spontaneous target coactivity with a different functional dataset.
- usesdoi:10.1038/s41586-021-03778-8
The pinned adult chemical site records, skeleton coordinates and neuron definitions supply the anatomical data.
- usesdoi:10.1016/j.cell.2023.07.035
The source calcium recordings and behavioral measurements underlie the reused activity benchmark.
- usesdoi:10.5281/zenodo.19388374
This is the fixed version 4 activity data record used by the benchmark.
- usesdoi:10.1038/s41586-019-1352-7
The benchmark supplies controls from the corrected July 2020 Cook whole-animal wiring reference.
- doi:10.1002/dneu.20307
Shared miniature currents at the worm neuromuscular junction motivate the site-noise model. Our data do not establish this mechanism in the brain.
- usesdoi:10.1038/ncomms5114
Curveball trades sample binary incidence matrices with fixed row and column counts.
- usesdoi:10.1103/PhysRevE.91.042812
The proof of uniform sampling supplies the reference-law basis.
- usesdoi:10.1103/PhysRevE.94.039902
The correction applies to the sampling proof. Unchanged and failed steps stay in the chain.
Cited by
1 publicationPublic catalog entries on Sciscape.
- At an 80th percentile calcium cutoff, local count tests found no clear extra three-cell activity beyond pairwise fits in two adult C. elegans maps
Related pair coactivity study used the same adult anatomy and activity source. The present test asks about three-cell activity beyond pairwise fits.