A peptide match count gave no stable prediction gain in fixed tests of 1,278 C. elegans response directions
We tested whether a molecular peptide map adds information about neural responses after anatomical wiring and gene expression breadth are known. We joined four anatomical exports, a 92-pair molecular map and the wild type (WT) and unc-31 signal propagation atlas. All 301 neurons with anatomical records could act as relays inside their own maps. The main sample had 1,278 directions with at least three finite trial values in each genotype. Five folds withheld source expression groups and removed their labels from both training roles. Adding a peptide-receptor match count raised Brier loss from 0.082753 to 0.084248 in WT and from 0.052261 to 0.052552 in the mutant. WT gains changed sign under two other fold assignments. All planned descriptive ranges for added gains included zero. Of 130 WT detections, 45 met only the mutant equivalence criterion, while 64 met neither mutant criterion. The test did not establish added prediction value for this count. It did not directly test biological response loss. Sparse mutant data, a weak mutant baseline, fixed models and data from different animals limit the result. The package gives the paired benchmark, channel lists, source versions and hashes, original code, fitted states, forecasts, figures and reproduction steps.
connectome · structure and function · Caenorhabditis elegans · neuropeptide · unc-31 · signal propagation · prediction · open benchmark
References
10- usesdoi:10.1038/s41586-023-06683-4
The signal propagation atlas supplies WT and unc-31 assay outcomes and equivalence criteria.
- usesdoi:10.17605/OSF.IO/E2SYT
Original functional data collection. The exact HDF5 export is pinned by commit and SHA-256.
- usesdoi:10.1016/j.neuron.2023.09.043
The molecular map supplies known gene pairs and neuron expression. We use the February 2024 source update.
- usesdoi:10.6084/m9.figshare.c.6895870.v1
Source collection for the peptide map. The pinned Git commit and hashes identify the later files.
- usesdoi:10.1016/j.cell.2021.06.023
CeNGEN supplies expression measurements used by the molecular map.
- usesdoi:10.1016/j.celrep.2023.113058
The receptor screen supplies known ligand-receptor interactions used by the molecular map.
- usesdoi:10.1098/rstb.1986.0056
Legacy whole-animal and L4 anatomical exports supply wiring and relay neurons.
- usesdoi:10.1038/s41586-021-03778-8
Two adult anatomical exports supply separate specimen wiring maps.
- usesPredicted self-signaling pair counts fell within matched receptor profile ranges in 127 C. elegans expression groups sci:sha256:70c513a1b25c8f973e923136e6aae7e5ea6deff017b8baaf05011f76e608ea52
We reuse its binary molecular expression, gene-pair and identical-profile group extracts. Fresh original layers and continuous expression verify each extract.
- usesPharynx controls reduced the added prediction gain from indirect walks by 89% in a fixed C. elegans atlas test sci:sha256:3d17f027f5db904dad6c633521a74f387a32e9ff999808faaca428e78f85505d
We use its pinned anatomical input manifest. Its compartment-control result also motivates pharyngeal terms in both models.
Cited by
2 publicationsPublic catalog entries on Sciscape.
- usesPeptide pair counts raised ridge test error by 0.20% for WT and unc-31 response differences in 1,342 C. elegans atlas pairs
We extend its peptide count detection question to continuous response magnitude differences and channel-specific models in the same atlas.
- Peptide channel terms gave an uncertain 1.93% timing error reduction in a nested ridge test of 739 C. elegans kernels
Earlier work tested peptide compatibility against binary response detection. Our test concerns temporal center.