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A fixed model gave a 0.000009 mean Brier gain from two-step electrical paths in 15,384 C. elegans atlas pairs

We tested whether two-step electrical paths add information about detected responses to neural stimulation. We used 15,384 ordered pairs from the WT signal propagation atlas in WormNeuroAtlas 0.0.7.3. We formed paths within two separate adult anatomy maps. Five folds kept opposite directions and left/right copies of a class pair together. The fixed logistic model controlled for direct wiring, trial count, neuron identity, bilateral homology, endpoint degree, and other two-step path types. Adding electrical paths raised Brier error by 0.000047576 in map 7 and reduced it by 0.000065852 in map 8. The mean reduction was 0.000009138, or 0.020 percent. Its central 95 percent node-weight range was -0.000159678 to 0.000207933. It includes zero. All planned checks also gave ranges across zero. A wider White whole-map test used 23,384 measured pairs. Its range also included zero. Raw detection rates were about twice as high with an electrical path among pairs without direct wiring or bilateral homology. Thus the raw association did not give a clear added benefit under the full model. The ranges keep predictions fixed and do not measure variation across animals. The test does not establish equivalence or identify routes used by neural signals. The package preserves code, derived inputs, predictions, model states, source hashes, figures, and rebuild instructions. Independent path counts and score calculations passed. A fresh source download reproduced the numerical results.

C. elegans · connectome · gap junction · signal propagation · two-step paths · structure and function · prediction benchmark

Admitted 1 citing publication

References

9
  1. usesdoi:10.1038/s41586-023-06683-4

    The WT neural signal propagation atlas supplies the measured response labels and observation counts through its pinned WormNeuroAtlas export.

  2. usesdoi:10.17605/OSF.IO/E2SYT

    Original data record for the signal propagation atlas. The exact input is the 0.0.7.3 wheel export compiled on 28 June 2023.

  3. usesdoi:10.1038/s41586-021-03778-8

    Adult anatomy maps 7 and 8 supply separate chemical and electrical graphs through the pinned export. The paper describes limits in electrical annotation completeness.

  4. usesdoi:10.1098/rstb.1986.0056

    White whole and L4 anatomy exports supply the planned scope and source checks.

  5. doi:10.1103/6wgv-b9m6

    Prior work compared network modules and hubs in the anatomical and measured signaling networks.

  6. doi:10.1371/journal.pcbi.1005021

    Prior work studied common-neighbor circuits and their model function. This study tests conditional prediction of measured responses.

  7. Stable chemical connections across eight C. elegans connectomes did not propagate optogenetic signals more often than variable connections at matched adult synapse count sci:sha256:5cbb4c1917dff79c9e9f17c6ff6ae5d0ba556de73d1a96c2f13df319c7fef4d0

    Prior SCI work compared direct chemical stability and gap junctions with signal detection. This study tests indirect electrical paths.

  8. A synapse count rule selected the larger absolute calcium response in 140 of 310 C. elegans atlas pairs with at least five trials per direction sci:sha256:8415f4434c1d662db2900bdc7768e73baa29298f62a5ac491f42f08e0f9cca2a

    Prior SCI work tested chemical direction counts and documented source identity issues. We independently read the source rows and test two-step path counts.

  9. usesThe union of two adult C. elegans brain maps gave paths of at most two edges for 1,102 neuron pairs with no such path in either map sci:sha256:fa0ea4c43e02533a5f18b5a255a13297792c2b49c443ef165f63ecefeeababae

    Its map-pooling audit motivates construction of paths within each exported anatomy map. No edge can switch maps inside a route.

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