Shared synapse sites increased target count variance in eight C. elegans maps under an independent site loss model with probability 0.5
One chemical synapse site can contact several target cells. We tested how this grouping changes the number of targets that retain direct input from one source cell. We used the eight brain maps from Witvliet and colleagues. Each site had an independent loss state. At an assumed loss probability of 0.5 per site, recorded groups gave 1.54 to 2.02 times the target count variance of independent contacts. Both models gave the same expected count. Recorded groups also exceeded the central 95 percent range of matched random groups in all eight maps. The random groups kept every connection count and every site target count fixed. Four finite chains gave 512 reference draws per map. These ranges are model references, not biological confidence intervals. All data selection checks kept the variance ratio above one. A model with partial sharing gave a smaller effect. Two exact examples showed that identical connection counts and site target counts can give different variances. Separate matrix calculations checked 211,004 pair records and 40,494 source records. The package contains code, sufficient counts, source URLs and hashes, reference draws, figures, and rebuild instructions. The study is exploratory. It does not estimate release rates or neural activity. The result applies to direct input availability under the stated loss assumptions.
connectome · C. elegans · polyadic synapses · synapse loss · target count · joint failure · reproducibility
References
7- usesdoi:10.1038/s41586-021-03778-8
We use the eight recorded chemical synapse site lists and cell metadata from the authors' pinned source repository.
- doi:10.1093/genetics/iyab072
Prior work explains that standard graph displays omit polyadic site structure.
- doi:10.1002/dneu.20307
Concurrent miniature currents at muscle cells support a possible common action at a polyadic site. This does not calibrate our brain loss model.
- doi:10.1016/j.isci.2024.110713
Prior graph work studies redundancy and reachability. Our outcome concerns direct target input under site loss.
- usesdoi:10.1038/ncomms5114
We implement Curveball trades to keep site target counts and all source-to-target counts fixed.
- supportsdoi:10.1103/PhysRevE.91.042812
The convergence result guides the trade clock. We retain failed trades. Finite chains are described as model references.
- doi:10.1103/PhysRevE.94.039902
We cite the correction to the Curveball convergence paper.
Cited by
5 publicationsPublic catalog entries on Sciscape.
- With independent site loss, recorded size placement gave 7.54% less variance of retained weight fractions than size shuffles for 446 connections in one adult C. elegans map
Related work tests the variance of target availability under site loss. The present outcome is marginal fractional structural weight.
- supportsTests of synapse distances rejected 7.7 to 9.2 percent of random label controls at a 5 percent cutoff in two C. elegans maps
Prior SCI work shows a different consequence of grouping contacts at a synapse site. It tests target variance under site loss, not spatial test calibration.
- supportsShared sites reduced mean target order error by 12 to 31 percent in eight C. elegans maps under 50 percent independent site loss and a minimum count of five
This study gives a distinct target-availability covariance result under site loss. We test count differences and target order.
- supportsPairs of distinct contacts gave a 79–81% smaller birth-to-adult fall in partner agreement for 91 C. elegans neurons
It showed why synapse site groups matter for a joint target outcome under a loss model. We retain sites but use pair selection rules instead of a biological loss model.
- With independent site states, equal rates and unit weights, eight 162-cell C. elegans panels gave maximum readout variance ratios of 2.12–2.60 against independent contacts
This prior study calculated target survival count variance. Our outcome is a linear readout of retained site contact counts.