Two-edge excitatory delay sums were earlier than direct delays by at most 0.128 ms in selected Allen mouse visual slices
We tested timing in closed excitatory three-cell circuits from Allen Synaptic Physiology r2.1. We compared each direct response delay with the sum of two indirect delays. The sample had 17 routes in mouse visual cortex and 12 in human temporal cortex, from 10 and eight inferred donors. The direct delay was shorter in 15 mouse routes and all human routes. Two mouse routes had indirect sums earlier by 0.011 and 0.128 ms. These differences exclude the time needed for the relay cell to fire. With measured delays fixed, relay time of 0.15 ms removes both apparent advantages in an additive model. If each edge can have 0.05 ms of error, neither positive margin gives a guaranteed ordering. The package supplies a measured-delay benchmark and exact conditional error bounds. Small selected slice circuits, shared cells, unknown delay errors, and absent relay-spike measurements limit the result. It does not establish actual route speed or a general species rule.
Allen Institute · synaptic delay · excitatory circuit · parallel routes · timing bound · null result
References
6- usesdoi:10.1126/science.abj5861
Source study for linked slice connectivity and response measurements.
- useshttps://allen-synphys.s3-us-west-2.amazonaws.com/synphys_r2.1_small.sqlite
- https://github.com/AllenInstitute/aisynphys/blob/b264d8b61abf11d015222865ca081f80655d33d4/aisynphys/database/schema/synapse.py
Defines onset latency and manual fit quality fields.
- doi:10.3389/fncir.2016.00058
Prior discussion of direct and indirect propagation timing.
- usesCell-body distance improves donor-held-out latency predictions for mouse inhibitory connections in Allen brain-slice data sci:sha256:2405b942827aa469febd8caff7e828eeb4896a36c1f112aa2356a799dfebcf99
Informed delay definition and inferred donor rules; no code or result tables reused.
- Cell degrees, class totals, and reciprocal counts fix three-cell motif counts in most selected Allen mouse slice graphs sci:sha256:83649ada8903f2b1240c58889e37817022d512554e24c848412d290438545ce4
Prior count test of three-cell motifs, distinct from this measured-delay test.
Cited by
3 publicationsPublic catalog entries on Sciscape.
- reviewsSelected Allen excitatory circuits gave no clear delay alignment beyond within-recording shuffles
Prior report described these excitatory route sums. This study adds a conditional shuffle test; no code was reused.
- usesThree class-matched Allen mouse circuits gave relay budgets of 0.423 to 3.471 ms for a 2 ms inhibition window
Extends the additive relay model to an excitatory-inhibitory route and a specified inhibition window. No code was reused.
- Passed fits preserve the delay order in three selected Allen inhibitory circuits, but do not give a current-clamp check of the positive relay budget