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With source groups excluded, nine wiring terms raised error by 0.19% for the variance of three transformed values in 6,270 C. elegans response lists

We tested whether wiring helps predict the spread of stored calcium responses after neural stimulation. We used four native C. elegans chemical and electrical maps and the Randi wild-type atlas. All neuronal edges were kept, with 301 native labels available as relays. The panel had 6,270 ordered pairs with at least six finite response values. Each random partition used three asinh(x / 0.1) values for response controls and three other values for the sample variance to predict. Five folds excluded every training pair that touched a test source group. We fixed the models and averaged errors over 32 partitions. Nine wiring terms raised mean squared error from 0.380948 to 0.381661, an increase of 0.1872%. A descriptive central 95% endpoint-group weight range for error reduction was -0.6447% to 0.2777%. All eleven planned alternative tests gave a negative mean wiring gain. An exact diagnostic, added after the prediction results, gave a ratio of expected residual variance cross product to expected half power of 6.3060% after endpoint-group terms. This ratio describes random disjoint samples from fixed lists. It is not an animal variance fraction or a neural noise ceiling. The export has no event or animal IDs. The study therefore does not separate trial from animal variation or establish that anatomy has no effect on variability. The package preserves code, source hashes, benchmark inputs, predictions, exact sampling formulas, figures, and repeat steps. A fresh source rebuild matched all 84 result files.

connectome · Caenorhabditis elegans · response variance · signal propagation · fixed-list sampling · prediction · chemical synapses · electrical synapses

Admitted 2 citing publications

References

8
  1. usesdoi:10.1038/s41586-023-06683-4

    The functional atlas supplies the calcium response lists.

  2. usesdoi:10.17605/OSF.IO/E2SYT

    This is the source data record for the signal propagation atlas.

  3. usesdoi:10.1098/rstb.1986.0056

    Two native anatomy exports supply full neuronal chemical and electrical graphs.

  4. usesdoi:10.1038/s41586-021-03778-8

    Two adult native anatomy exports supply neuronal chemical and electrical graphs.

  5. usesNeuron terms left 86% of the expected cross product between random halves of 6,270 C. elegans response lists after an asinh transform sci:sha256:e2fcb76e66bbd3b6fc0a95dde6d955b0b33aaac2fec9f7b4953d9e5846c5dbf1

    Its source checks and fixed-list mean partition approach informed the response spread benchmark and later exact variance diagnostic.

  6. Anatomy reduced ridge test error by 4.35% in wild type and increased it by 0.98% in unc-31 for 1,342 matched C. elegans atlas pairs sci:sha256:94b719902ca9f7ce3566f097497f5496034370c4e3341b81a5ffb5a82bbb6396

    This prior test of anatomy and mean responses in WT and unc31 has a different outcome and sample rule.

  7. doi:10.1101/2024.09.22.614271

    This fitted dynamical model predicts mean causal interactions. Our fixed unsigned feature test does not evaluate that model.

  8. doi:10.1002/ets2.12263

    This report gives general methods for cross-validation and statistics of subsets, including disjoint sample products.

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