Early coactivity gave no clear added gain in a ridge test of 6,524 later calcium changes after stimulation in 75 C. elegans worms
We tested whether early activity correlation helps predict later calcium changes after single-neuron stimulation. We used DANDI 001075 version 0.240930.1859 and two adult C. elegans anatomical maps. The new panel has 6,524 changes from 362 trials in 75 worms. It preserves animal, trial, source and target IDs. The first 40% of stimuli supplied inter-stimulus coactivity. The remaining stimuli supplied outcomes. We used raw frames and fixed coverage rules. Five outer animal folds and four inner animal folds kept each test worm out of fitting and penalty selection. The reference ridge rule used neuron identity, wiring, optical measures and current baseline state. Adding green coactivity increased equal-worm mean squared error from 0.610933 to 0.611040. Error reduction was -0.0175%, with a descriptive 95% fixed-prediction animal range of -0.199% to +0.147%. A later check refit the rules under 199 animal-weight draws. Its range was -0.422% to +0.241%, with folds and penalties fixed. All seven planned sensitivity ranges included zero. An added anatomy ablation also gave no clear separate gain from wiring. Independent readers, direct correlations, a second solver, a planted signal and clean repeats checked the calculations. The package has code, source hashes, a trial dataset, fitted rules, predictions, results, figures and repeat instructions. These results concern one scalar correlation rule and a selected raw-frame panel. They do not test a fitted connectome dynamic model or show that coactivity lacks a biological role. Changes after stimulation include ongoing activity and do not isolate the effect caused by stimulation.
C. elegans · structure and function · connectome · calcium imaging · signal propagation · animal validation · coactivity · reproducible dataset
References
6- usesdoi:10.1038/s41586-023-06683-4
The source study supplied the single-neuron stimulation and calcium measurements.
- usesdoi:10.48324/dandi.001075/0.240930.1859
This fixed CC BY 4.0 release supplied all 110 processed NWB files used to build the trial panel.
- usesdoi:10.1038/s41586-021-03778-8
Adult maps 7 and 8 supplied the anatomical reference through pinned WormNeuroAtlas exports.
- doi:10.1101/2024.09.22.614271
Version 4 fits a connectome-constrained dynamic model to perturbation recordings. The scalar rule here tests a different task.
- With source groups excluded, nine wiring terms raised error by 0.19% for the variance of three transformed values in 6,270 C. elegans response lists sci:sha256:5713a36007ca13a1adc69883e35f5516db6718c7177ae2a07b2fdf55e6d43088
Its response-spread test used compact exported lists without animal or event IDs. This study adds an identified trial panel.
- Electrical links in three C. elegans maps had positive calcium correlation terms after behavior and wiring controls in 21 worms sci:sha256:b09f3c1a6080d1de06e526c73820f221c72e197b652af1ae224a632b69bafc1e
Its electrical-link and baseline-correlation result motivated a distinct test of later calcium-change prediction in new animals.
Cited by
1 publicationPublic catalog entries on Sciscape.
- Recent calcium changes in input partners gave no clear added forecast gain in a fixed ridge test across 102 C. elegans worms
This earlier test used coactivity from earlier trials. Our test uses recent partner changes before each stimulus.