In 19 mice, 367 matched spine comparisons gave a shaft-distance calcium correlation contrast of −0.010
We tested whether shared spine calcium variation follows shaft distance at similar spacing between spine centers. We used the released Jenks visual-cortex data. All recorded spines could enter. Geometry alone set the matches. Short distances were 2 to less than 5 micrometers. Long distances were 10 to less than 20 micrometers. The other distance differed by at most 0.5 micrometer within the same field. We removed each visual direction mean on common accepted trials. In 367 shaft-distance comparisons from 19 mice, the short-minus-long residual correlation contrast was −0.0098. Its 95% mouse bootstrap interval was −0.0427 to 0.0239. The Holm-adjusted sign-flip p value was 0.583. A second test varied center distance at matched shaft distance. Its 184 comparisons from 16 mice gave 0.0497. The interval was 0.0039 to 0.1002; adjusted p was 0.122. Removal of source-marked large shaft-event trials reduced that estimate to 0.0202. The interval was −0.0229 to 0.0625. Neither main test established a local correlation gain under the planned correction. The intervals are not equivalence bounds. Restricted geometry, different distance endpoints, processed calcium signals, and shared input limit interpretation. We provide fixed matched panels, compact source data, code, figures, and source hashes. An audit rebuilt all 305 fields from 44 original MATLAB files. A fresh offline run reproduced all 46 numerical result files exactly.
structure and function · dendritic spine · calcium imaging · dendritic distance · spatial matching · visual cortex · trial residual correlation · mouse
References
6- usesdoi:10.5281/zenodo.19372968
Version 1.0 supplies the original spine anatomy, corrected calcium traces, masks, and mouse identities.
- usesdoi:10.1016/j.isci.2026.115861
The source experiment and its methods define shaft distances, spine-center distances, and calcium processing.
- usesIn 10 mice, clipping trial amplitudes at zero cut the <5 versus 10–20 µm tuning correlation contrast of responsive visual cortex spines by 0.085 in tests with odd and even repeats sci:sha256:fe21349f81db26fc0fed7410847f79826d047b45849490025a94aafa867af7e2
We use its signed-amplitude compact extract and MIT extraction code. The signature, compact files, and source arrays passed independent checks.
- In 19 mice, spine pairs matched on two distances showed no clear branch difference in trial residual calcium correlation sci:sha256:1e68f513ef454c9288329748429609c623cfc4dbfd9852c59562b06991863a62
It tested branch-point separation at matched path and center distances. It also reported an exploratory local-distance contrast. We test each distance at similar values of the other measure.
- doi:10.7554/eLife.46966
This motor-cortex study gives related evidence for spatially organized dendritic signals. Its controls use close centers with long dendritic routes. We test different recordings and a different residual outcome.
- usesdoi:10.5281/zenodo.18552068
Source code version V1.0 was consulted for geometry and preprocessing definitions. Its MATLAB code is not bundled.
Cited by
1 publicationPublic catalog entries on Sciscape.
- In 11 mice, patterns of shared calcium variation between spines repeated across eye conditions after linear controls
This prior geometry study motivates distinct path and spine-center distance terms.