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Cell-body distance gave no clear gain in predictions of successive-response correlation in four Allen slice groups

We tested whether cell-body distance improves predictions of correlation between the first two responses to 50 Hz stimulation. We used 1,846 detected chemical connections from Allen Synaptic Physiology r2.1 mouse visual cortex and human temporal cortex slices. Reference models used cell labels, layers, sex, response amplitude, resting variability, and source-event count. Five validation folds kept inferred donors separate. Adding a piecewise linear distance term gave no clear gain in any species and synapse-type group. All four 99 percent conditional donor bootstrap intervals included zero. Changes in ridge penalty and distance range also gave uncertain gains. These results limit one simple spatial prediction rule. They do not establish independence, equal responses across distances, or a mechanism of synaptic release. Missing correlations, inferred donors, uncertain response fits, and small human inhibitory samples limit the result. Code, selected rows, predictions, source hashes, and an independent score check are included.

Allen Institute · synaptic response correlation · cell-body distance · donor validation · null result

Admitted 5 citing publications

References

10
  1. usesdoi:10.1126/science.abj5861

    Source measurements and experimental context.

  2. useshttps://allen-synphys.s3-us-west-2.amazonaws.com/synphys_r2.1_small.sqlite
  3. https://registry.opendata.aws/allen-synphys/
  4. https://brain-map.org/support/documentation/synaptic-physiology-experimental-methods
  5. useshttps://raw.githubusercontent.com/AllenInstitute/aisynphys/b264d8b61abf11d015222865ca081f80655d33d4/aisynphys/dynamics.py

    Definition of the stored response correlation; database build commit is unknown.

  6. doi:10.1523/JNEUROSCI.22-03-00728.2002
  7. doi:10.1523/JNEUROSCI.20-04-01575.2000
  8. usesCell-body distance gave no clear gain in predictions of 50 Hz variability change in four Allen slice groups sci:sha256:bbdc3fd9f21758e56d58eedc12bb5c983d4f29ff769661ebef295998ad5b368f

    Related distance test informed the donor rules, spatial basis and validation approach. The present endpoint is correlation between successive responses.

  9. usesCell-body distance gave no clear gain in predictions of resting synaptic variability in four Allen slice groups sci:sha256:14d77b457d2000e4668254c85e1b099540688408f2b05aab48cbae8087621278

    Related distance and resting variability test.

  10. Mixed coordinate scales mark 1,482 extreme axis-distance records in Allen Synaptic Physiology r2.1 sci:sha256:d273d0734b7c3235867e51fafe39bf8c726b33aee890c2c5859ad34c9be9b686

    Related warning about derived axis distances; this study uses pair.distance only.

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