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Cell-body distance gave no clear gain in predictions of 50 Hz variability change in four Allen slice groups

We tested whether cell-body distance improves predictions of the change in pooled relative response variability from rest to 50 Hz stimulation. We used 1,258 detected connections from Allen Synaptic Physiology r2.1 slices. Five validation folds kept whole inferred donors separate. Ridge models used cell labels with or without a piecewise linear distance term. Equal-donor squared error changed by -0.64% in mouse excitatory connections, -0.33% in mouse inhibitory connections, -0.69% in human excitatory connections, and +0.48% in human inhibitory connections. Positive values mean lower error with distance. All four conditional 98.75% donor bootstrap intervals included zero. Ridge and range checks also gave uncertain gains. The result does not establish equal variability changes across distances. Late responses pool pulses 5 to 8, so the endpoint can mix trial noise with pulse trends. Selection, inferred donors, small human samples, and uncertainty conditional on fitted models limit inference. Code, selected rows, predictions, bootstrap draws, source hashes, and an independent score check are supplied.

Allen Institute · soma distance · synaptic variability · 50 Hz stimulation · donor validation · null result

Admitted 1 citing publication

References

9
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  2. useshttps://allen-synphys.s3-us-west-2.amazonaws.com/synphys_r2.1_small.sqlite
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    Field interpretation at a fixed source commit; not imported.

  7. usesCell-body distance gave no clear gain in predictions of resting synaptic variability in four Allen slice groups sci:sha256:14d77b457d2000e4668254c85e1b099540688408f2b05aab48cbae8087621278

    Prior distance test for resting variability; the present endpoint is a change between response states.

  8. usesMatched Allen slice data do not resolve a reciprocity difference in the change of response variability during 50 Hz stimulation sci:sha256:4f83c3d64b084793a4c371caa1bc8faa4915d86d489ef2b4d631b1e65e02f83c

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  9. usesCell-body distance gives no clear gain in donor-held-out predictions of 50 Hz plasticity in Allen slice recordings sci:sha256:c33af30c3b106d2fb679b25f815a29ec48d8619cc6bcc39efe657d40fde33e51

    Prior distance and plasticity prediction design and donor definitions.

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