In a test between two adult C. elegans maps, shared sites gave no clear extra target connection score after contact and neuron controls
We tested whether neurons that receive input at one chemical synapse site have more chemical connections to each other in a separate animal. We used site groups in adult map 7 and target connections and membrane contact in adult map 8 of C. elegans. Each map had 180 identified brain neurons. The local random model kept every site size, every source-to-target count, and target counts inside each source and 2 micrometre cube. There were 3,650 target pair events. Without outcome adjustment, the excess of connected target pairs was 39.89 per 1,000 events. After a fixed logistic adjustment for target contact area, broad neuron roles, and additive neuron terms, the excess score was 0.44 per 1,000 events. The centered random 95% range was -4.49 to 4.30. The upper-tail Monte Carlo value was 0.418. Spatial and site record checks kept the result within their random ranges. None of the six larval checks passed Holm correction. A later contact-area-only check gave an excess of 2.95 per 1,000 events. The result applies to the tested conditional models and does not establish no population effect. We provide a weighted fixed-count sampler, all draws, source hashes, figures, an exact small-matrix audit, and instructions for a full rebuild.
connectome · Caenorhabditis elegans · polyadic synapse · membrane contact · conditional randomization · cross-animal anatomy
References
9- usesdoi:10.1038/s41586-021-03778-8
Supplies the eight chemical site lists, skeletons, neuron definitions, and seven membrane contact tables at the pinned Git commit.
- usesSynaptic target pair count deviations agreed across four pairs of C. elegans brain maps under local count models sci:sha256:a9496f3f38c091814fc929418745def6ce2afc5f19de7dcab452392190e077a8
Supplies the verified site selection, local block preparation, and fixed-margin code from which this weighted test is built. The new outcome is connectivity between target neurons in another animal.
- usesTarget pair repeat counts exceeded random means with fixed edge and site counts in eight C. elegans brain maps sci:sha256:fd9de6f2f733031e639058d54b8184abce55a9ab7e3d549d16c86e8a5eb7b254
Supplies the original fixed-margin site code retained as prior_reference.py, with its MIT notice.
- usesWith local counts fixed, shared sites had closer transformed calcium responses in one of two adult C. elegans maps sci:sha256:9b300b25c2c825a7116f9229dafe624fc59ac5ca3786e332b815262ed6275a5e
Its equal-site-size constraint informed an explicitly marked later sensitivity check. It tested calcium responses rather than the target connection outcome used here.
- Feedforward triad counts without reverse edges were within contact area control ranges in seven C. elegans maps at a cutoff of one synapse sci:sha256:23bc4cffbc09ef6735c01947c2b69570c66ef530ea1470aee89e9d5782379a9e
Shows that measured contact controls change graph motif results. The current analysis tests site grouping with the full source connection matrix fixed.
- doi:10.1093/genetics/iyab072
Explains that connection matrices do not retain the polyadic grouping of targets at a site.
- usesdoi:10.1038/ncomms5114
Introduces the Curveball fixed-margin matrix trade.
- usesdoi:10.1103/PhysRevE.91.042812
Provides the uniform stationary-law argument for Curveball, including failed trades.
- doi:10.1103/PhysRevE.94.039902
Correction to the fixed-margin uniform sampling proof.
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