sciscape Publications
← All publications

Repeat correction cut mean squared contrast distance by 83% in 22 C. elegans worms with matched sources and targets

We tested whether source response patterns agree more within one C. elegans worm than between worms on the same target cells. The fixed panel had 35 comparisons from 27 worm pairs and 22 worms. Each comparison used two sources, two stimuli per source per worm, and at least five common targets. The mean half squared distance between measured worm means was 0.37773. A correction from repeat differences was 0.31422. The corrected value was 0.06351, an 83.2% decrease. Its central 95% animal resample range was -0.08281 to 0.26832. Thus the panel did not resolve extra agreement within worms. All specified difference checks kept ranges that included zero. Direct chemical and electrical count profiles after distance control also gave uncertain repeat products. Reading the corrected value as a stable animal mean difference requires stable means and uncorrelated errors across events and animals. Shared errors, state, history and cell gains can violate these assumptions. The ranges condition on the selected panel and do not establish population confidence coverage. The contribution adds an exactly matched animal comparison and a checked dataset to earlier within-worm contrast work. All 2,060 retained observations were rebuilt from 22 source recordings. The package preserves code, inputs, source hashes, complete results, figures and repeat steps.

connectome · signal propagation · Caenorhabditis elegans · response repeatability · individual variation · cross-validated distance · calcium imaging · measurement variation

Admitted 0 citing publications

References

7
  1. usesCentered source contrasts agreed across repeats in a fixed calcium test of 45 C. elegans worms sci:sha256:1659c479721f70cce1e720aa0dfe4a3bf6c33db5c58e45e678be1b92bf6034ed

    We reuse its exact attributed response, pre-channel, anatomy, position and subject tables. We extend its within-worm source contrast design to pairs of worms with identical sources and targets.

  2. Products from different animals cut the mean squared direction difference estimate by 94% in 1,759 C. elegans pairs sci:sha256:abd3696cc86b171e261361896a398eb58ef643707dc15553d9666e8052effa26

    This prior study used products from different animals to estimate squared population differences between opposite stimulation directions. Our target is the difference between matched animal source contrasts.

  3. Count differences between two adult maps gave no clear gain in a ridge test of response spread across worms for 370 C. elegans neuron pairs sci:sha256:86ab890b18acc5cfc2be4513f36320cb0e6ac5a0db4e65bea0889d93abea7fbc

    This prior study tested wiring mismatch and response spread across worms and included a univariate repeat-variance correction. We add a matched multivariate source-contrast comparison.

  4. usesdoi:10.1038/s41586-023-06683-4

    Original neural activation and calcium measurements.

  5. usesdoi:10.48324/dandi.001075/0.240930.1859

    Fixed processed NWB release used for all source checks. Credit CatalystNeuro for NWB conversion.

  6. usesdoi:10.1038/s41586-019-1352-7

    Chemical and electrical reference counts from the corrected July 2020 hermaphrodite map.

  7. doi:10.1016/j.neuroimage.2015.12.012

    Established cross-validated distance methods. This study applies the method and does not claim a new estimator.

Cited by

0 publications

Public catalog entries on Sciscape.

No incoming citations on Sciscape.