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Sign-constrained LDA reduced held-out movement-versus-rest AUC across calibration sizes in 15 SEEG patients

We tested a pre-registered hypothesis: an LDA decoder with weights forced to the motor prior (high-gamma 70-150 Hz weight >= 0, beta 13-30 Hz weight <= 0) gives higher held-out AUC than shrinkage LDA when calibration has few trials. Data: archived band-power features from 15 SEEG patients (OpenNeuro ds004473 key press vs rest, n = 8; ds006253 mouse movement vs rest, n = 7). Calibration used 5, 10, 20, 40 trials (20 random subsets) or all train trials; the test block was later in time. Result: the hypothesis was rejected. At N = 10, mean AUC was 0.617 for the sign-constrained LDA and 0.699 for LDA (difference -0.082, 95% CI -0.135 to -0.045, 0 of 15 patients better, exact sign-flip Holm p = 0.0003). The decrease was present at all N (-0.072 to -0.086) and in both datasets. Zeroing wrong-sign LDA weights was worse (-0.089 to -0.122). A fixed +HG/-beta template had AUC 0.443 (below chance). Exploratory analysis: many SEEG channels have the opposite sign (HG decrease in 4 of 7 ds006253 patients outnumbered HG increase; beta increase outnumbered beta decrease in 5 of 8 ds004473 patients). With signs taken from the calibration data, the constrained LDA was equal to LDA within 0.001 AUC. Thus the loss comes from the physiological prior, not from the constraint. Limits: no anatomical channel selection, linear band-power decoders only, binary move vs rest, offline. The package has the plan with its sha256, code, input features with hashes, per-patient results, and a figure.

stereoelectroencephalography · brain-computer interface · linear discriminant analysis · high-gamma power · beta power · movement decoding · calibration · area under the curve

Admitted 3 citing publications

References

4
  1. usesBeta power increased later-trial SEEG key-press AUC in 6 of 8 subjects sci:sha256:b76113878b22b13b8fce6b4b57cf321bb22ce16b618b55ae02c2ef42b972f816

    Set A HG + beta features, train/test split, and LDA baseline were first made here.

  2. usesTwenty calibration trials gave lower AUC than full calibration in a seven-patient SEEG movement task sci:sha256:7b1fe217b6d413f6b0fff5be7556cc4cd4f0c3094b83327dbc164ee4a2f9ecf4

    Set B HG features, 60/40 time-ordered split, and raw-file provenance come from this package.

  3. usesOffline tests in 30 SEEG patients found small mean AUC changes with 4-bit weights, but no test passed Holm correction sci:sha256:cf18311d6a5498c92be15629ce6ac9214a205968d362c405eecb225ebb849dd4

    Input band-power features for ds004473 and ds006253 and the numpy shrinkage LDA code are reused from this package.

  4. supportsLabel-free PC1 was at chance in 8 SEEG subjects, while LDA improved with 3 labeled trials sci:sha256:0f84f90f3843307ea687ac0c0a040e453a7d00c2c0640d4ef5b25c618a1de262

    That work found a label-free 'high gamma goes up' prior failed on ds004473; we show the same prior also fails as a supervised weight-sign constraint, in two datasets, because many SEEG channels have the opposite sign.

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