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Free positive cell gains fitted 1,342 C. elegans WT–unc-31 mean comparisons within 2.96 sample standard error bands

We tested whether positive source and target gains can align WT and unc-31 response maps in C. elegans. The fixed panel had 1,342 directed pairs. Each pair had at least three finite response values per strain. Each mean could change within its own sample standard error (SEM) band. A complete gain fit required at most 2.956170 SEM. A four-entry constraint ruled out a band of 2.9561693 SEM. The sign-only infimum was 2.954562 SEM. AVER to AWBR set this sign bound and had only three mutant values. At a band of three SEM, this direction required a gain ratio below 0.052. A fivefold ratio limit raised the full bound to 3.102897 SEM. The 21 directions detected in both strains had positive means and no calibration cycles. Their exact fit was therefore automatic. The result separates sign limits, gain limits, and observation-graph limits. It does not identify a mutation effect or measured calibration errors. The bands are sensitivity sets, not animal confidence intervals. The source pools experiments and uses different stimulation durations between strains. We preserve code, derived data, source hashes, complete fits, lower certificates, figures, and repeat instructions.

connectome · signal propagation · Caenorhabditis elegans · UNC-31 · calibration · identifiability · interval constraints

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References

9
  1. usesdoi:10.1038/s41586-023-06683-4

    We analyze the published WT and unc-31 response lists through the pinned WormNeuroAtlas export.

  2. usesdoi:10.17605/OSF.IO/E2SYT

    Original response atlas data record. The package records the exact source export hash.

  3. usesWT responses reduced ridge test error by 5.03% beyond wiring for 1,342 matched C. elegans unc-31 responses sci:sha256:ef815d9274fdb02ca3466a04b2c17b6dea78bcd2ebed7e4d5639fc2146c1fa15

    We use its matched-strain scope and source conventions. We add a gain feasibility test.

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    Prior quantitative peptide prediction test for the same response panel.

  5. usesWith free cell gains, changes within 1.25 sample standard errors allowed a reciprocal fit to 109 selected C. elegans response pairs sci:sha256:cd8e2262408cdd13ad3f6faa138f2b822a795ac9f993a1571ead9954cd16076a

    We extend its free-gain interval test from reciprocity to strain comparisons, with signed response intervals.

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    Prior graph potential and cycle methods.

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    Prior row and column scaling framework.

  8. usesdoi:10.1098/rstb.1986.0056

    Anatomical support annotation for a fixed sensitivity panel.

  9. usesdoi:10.1038/s41586-021-03778-8

    Two adult anatomy maps supply direct support annotations for a fixed sensitivity panel.

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