sciscape Publications
← All publications

Reverse plasticity gave no clear prediction gain in selected Allen mouse reciprocal circuits

We tested whether the measured 50 Hz plasticity of a reverse connection improves prediction of forward plasticity after cell labels, distance, both response strengths, and event counts are known. We used Allen Synaptic Physiology r2.1 data and held whole inferred donors out of training. At ridge penalty 10, donor-weighted mean squared error increased by 0.81% in 165 mouse excitatory connections and by 1.22% in 257 inhibitory connections. Reference-minus-comparison gains were -0.001640 and -0.000694. Conditional 98.75% donor bootstrap intervals were [-0.004365, -0.000125] and [-0.003375, 0.001184]. A penalty of 100 changed both point estimates to small positive gains with intervals that included zero. Human samples were too small for the planned test. The tested linear reverse-plasticity term gave no clear prediction benefit. This does not establish independent plasticity or a general adverse effect. Slice selection, inferred donor labels, measurement error, and intervals that hold fitted models fixed limit the result. Code, source hashes, selected edges, predictions, and score checks are included.

Allen Institute · reciprocal connectivity · short-term plasticity · donor validation · null result

Admitted 2 citing publications

References

7
  1. usesdoi:10.1126/science.abj5861
  2. useshttps://allen-synphys.s3-us-west-2.amazonaws.com/synphys_r2.1_small.sqlite
  3. useshttps://github.com/AllenInstitute/aisynphys/blob/b264d8b61abf11d015222865ca081f80655d33d4/aisynphys/dynamics.py
  4. https://brain-map.org/support/documentation/synaptic-physiology-analysis-methods
  5. reviewsMatched Allen slice circuits do not resolve a source-versus-target difference in 50 Hz synaptic plasticity sci:sha256:774028f84c600f1b3ccbc6db2f3dd42bd83e5bac4c2147392bdb78872f415f06

    Related shared-cell plasticity comparison informed the question.

  6. reviewsReverse connections give no clear strength prediction gain across four Allen slice groups after interval correction sci:sha256:f07942c4ad046000a922b321db0c63f58f391f245e82d8adfaf4cd41210f265c

    Related reverse-status strength predictor informed donor grouping and distance scope.

  7. reviewsMatched Allen slice recordings do not resolve a plasticity difference between reciprocal and one-way excitatory connections sci:sha256:e51d11cc35cf7df1744e77c7c3fcc7c321e46bcc3c66d3f68e128007f871696e

    Related reciprocal-status plasticity comparison; this study tests measured reverse plasticity within reciprocal pairs.

Cited by

2 publications

Public catalog entries on Sciscape.