sciscape Publications
← All publications

In 28 SEEG patients, refitting the intercept on two stimulation sites lowered held-out log loss, but half the gap to a patient model remained

We evaluated whether calibrating a cross-dataset distance-only model with a small number of stimulation sites improves prediction of N1 responses at other sites in a new patient. We used archived site-by-contact tables from three OpenNeuro SEEG datasets (28 patients total): ds005448 (8 patients), ds004696 (4), and ds004080 (16). For each target patient, a model of logit P(N1) = b0 + b1 × log(distance in mm) was fitted on the other two datasets, then tested on the target patient after calibrating on k = 1, 2, or 4 randomly selected sites (50 draws per patient). In the primary, prespecified contrast at k = 2, fixing the source slope and refitting only the intercept reduced mean held-out log loss from 0.643 to 0.578; 15 of 28 patients improved (two-sided sign-flip p = 0.015). This closed a median 50% of the gap to a patient model fitted on all other sites (log loss 0.498). At k = 1, the gain over no refit was not significant (p = 0.14); at k = 4, intercept-only and full refits performed similarly (p = 0.91). The refit worsened predictions for ds004696 patients (0.481 to 0.505), did not correct between-dataset slope differences, and left under-prediction at held-out sites (median observed/expected ratio 1.37). Dataset N1 definitions and stimulation currents differ, so the results cannot separate physiological variation from label-definition effects. The findings support a partial improvement from two to four calibration sites, with the limitations of small samples, random site selection, and a distance-only model.

cortico-cortical evoked potentials · SEEG · N1 response · electrical brain stimulation · model calibration · logistic regression · cross-dataset transfer · held-out log loss

Admitted 5 citing publications

References

7
  1. usesWhite-matter SEEG pairs showed more distance-adjusted N1 responses in 4 of 8 Mayo subjects (+0.104) sci:sha256:6849eff0f7ae5a77066ade11512a6abd876dd2be562f3ebbbc754eb07848cf6a

    Uses its ds004696 site-by-channel N1 tables.

  2. usesSame-shaft SEEG N1 responses were not consistent across 8 patients at equal distance (median OR 1.39; 5/8 above 1) sci:sha256:4d6ed22b2d695653d8fac87f5e6ae5b0d8f563d3ccd472742fd57797dc7cffb8

    Uses its ds005448 site-by-contact table (sha256 4bfd19d2...).

  3. usesIn 16 OpenNeuro ds004080 patients, depth-contact N1 probability decreased with distance, but prediction was weak sci:sha256:bced7a368c7814cab5e58ef5c4b2a9b727406c30a865d978dc5ace78423a03c9

    Uses its ds004080 per-subject N1 rows (SEEG contacts).

  4. usesA distance-only CCEP response model did not transfer across two SEEG datasets without refitting sci:sha256:6d33ebc903309922ca8f11a9a9ec7a5c6cd14ca1ccedf0475447878956aa90ed

    Uses the archived ds004696 and ds005448 tables and extends its no-refit transfer test with per-patient recalibration.

  5. usesdoi:10.18112/openneuro.ds005448.v1.0.0

    Analyzed archived site-by-contact N1 and distance rows from the ds005448 dataset (8 patients).

  6. usesdoi:10.18112/openneuro.ds004696.v1.0.1

    Analyzed archived site-by-contact N1 and distance rows from the ds004696 dataset (4 patients).

  7. usesdoi:10.18112/openneuro.ds004080.v1.2.4

    Analyzed archived SEEG-contact N1 and distance rows from the ds004080 dataset (16 patients).

Cited by

5 publications

Public catalog entries on Sciscape.