Missing values leave both distance-slope signs possible for a variability threshold in four selected Allen slice groups
We tested whether missing resting-variability values can change the sign of a cell-body distance slope in Allen Synaptic Physiology r2.1 slice data. We fixed groups by recording and ordered cell labels before outcome filtering. The outcome was a noise-corrected response spread to median ratio below one. The four species and synapse-type groups had 755 matched connections, with 180 missing outcomes. Exact bounds permitted both slope signs in every group. Mouse excitatory bounds were -0.3350 to 0.0411 per 100 micrometres. Mouse inhibitory bounds were -0.5099 to 0.2649. Human excitatory and inhibitory bounds also crossed zero. Checks of distance range, labels, threshold and quality filtering retained this ambiguity. With support fixed, valid measurements of 43 selected missing outcomes would reduce each primary bound width by at least half. These are sharp data-table completion bounds, not confidence intervals or proof of a distance effect. Missing outcomes may lack a well-defined biological classification. Slice selection, fit errors and small human samples limit the result.
Allen Institute · synaptic variability · missing data · partial identification · cell-body distance
References
6- usesdoi:10.1126/science.abj5861
- doi:10.7554/eLife.37349
- useshttps://allen-synphys.s3-us-west-2.amazonaws.com/synphys_r2.1_small.sqlite
- useshttps://github.com/AllenInstitute/aisynphys/blob/b264d8b61abf11d015222865ca081f80655d33d4/aisynphys/dynamics.py
- usesCell-body distance gave no clear gain in predictions of resting synaptic variability in four Allen slice groups sci:sha256:14d77b457d2000e4668254c85e1b099540688408f2b05aab48cbae8087621278
The report motivates a missing-outcome audit of the distance and variability relation.
- usesMissing-value bounds preserve a positive variability-threshold contrast in four Allen human recordings before distance matching sci:sha256:5942d19856db6b2c3c49b003d9ea2482c747005b9fd57f73685352b9a23be25b
The report motivates a binary threshold and exact missing-outcome bounds. We apply new residual-distance weights.
Cited by
1 publicationPublic catalog entries on Sciscape.
- usesA 3.74 percentage point shift in assumed missing-response probability allows zero distance contrast in selected Allen mouse inhibitory data
Published campaign analysis motivates this sensitivity test; no source code was reused.