Matched Allen slice data do not resolve a distance trend in voltage-to-current rise-time ratio
We tested whether cell-body distance predicts the ratio of voltage and current response rise times in Allen Synaptic Physiology r2.1 slice data. We matched recording and ordered cell labels. The four samples contained 605 detected connections in total. No ratio-slope interval excluded zero after a nominal four-group correction. In 280 mouse visual-cortex inhibitory connections from 92 inferred donors, the slope of log voltage rise time minus log current rise time was -0.190 per 100 micrometres. Its 98.75% donor bootstrap interval was -0.485 to 0.169. A complete-label check gave a negative interval, but other checks did not. Human samples had 15 and five inferred donors. Each of 1810 eligible paired summaries exactly matched its weighted accepted fits. This exploratory result does not establish a zero effect, a membrane-filter mechanism, or a common rule across species and regions. Missing data, selected slice circuits, inferred donors, and uncertain fits limit inference. The package supplies code, source rows, matched evidence, uncertainty draws, and checks.
Allen Institute · synaptic rise time · paired voltage and current · cell-body distance · null result · matched circuits
References
7- usesdoi:10.1126/science.abj5861
Public paired-recording data and context.
- useshttps://allen-synphys.s3-us-west-2.amazonaws.com/synphys_r2.1_small.sqlite
- https://raw.githubusercontent.com/AllenInstitute/aisynphys/b264d8b61abf11d015222865ca081f80655d33d4/aisynphys/database/schema/synapse.py
- https://raw.githubusercontent.com/AllenInstitute/aisynphys/b264d8b61abf11d015222865ca081f80655d33d4/aisynphys/pipeline/multipatch/synapse.py
- usesCell-body distance gave no clear gain in PSP rise-time predictions in four Allen slice groups sci:sha256:df736fd9f18eeb32e7953c11d079e187a02507e19ff7ccb3b46d9d86ee902d57
Prior design and findings from the same source release; no prior code or data tables reused.
- usesMean delay increased with cell-body distance within outputs from the same inhibitory source in selected Allen mouse slices sci:sha256:e711991fef480daf5d149dab04749ec1b1425e3d7c14f53663f7e25e3327401f
Prior design and findings from the same source release; no prior code or data tables reused.
- usesLog onset had a larger within-source distance slope than log rise in Allen mouse inhibitory outputs with unknown target classes kept sci:sha256:b1ea1058f29f52871d7cf96f0fd0d8a80b3d21a42aac7f888c4c3741b97f72f2
Prior design and findings from the same source release; no prior code or data tables reused.
Cited by
1 publicationPublic catalog entries on Sciscape.
- usesA factor 1.10 error bound certifies 18 of 69 fitted rise-time reversals in selected Allen cortical inputs
Uses its paired-mode timing and fit-endpoint definitions as context; tests orders instead of distance slopes.