In 18 UCLA SEEG patients, slow-wave coupling and HFA power marked clinical SOZ pairs, but MI did not add significantly to HFA power
Question: does the slow-wave-HFA coupling marker of AutoSci a3d06b3c (Detroit/Japan cohort) also mark seizure-onset-zone (SOZ) SEEG pairs in a different centre? Data: OpenNeuro ds005398 v1.1.3, the 18 UCLA SEEG patients (age 2-28 years), 1285 bipolar pairs, 181 SOZ pairs by the clinical label. We read two 90-s sleep clips per patient by HTTP byte range and kept the SHA-256 of each range. We wrote the plan before we read the signal. Features: Tort MI of 80-300 Hz amplitude by 0.5-2 Hz phase, 80-300 Hz (HFA) power and delta power, with the definitions of a3d06b3c. Statistics: within-patient AUC, exact sign-flip test, bootstrap CI, Holm over 3 tests. Primary clip: MI AUC 0.682 (CI 0.601-0.749, 16 of 18 patients above 0.5, Holm p = 0.0015). HFA AUC 0.728 (CI 0.657-0.796, Holm p = 0.0002). Both replicated. MI after rank control for HFA: AUC 0.577 (CI 0.480-0.662, p = 0.13). This did not replicate. The CI includes the a3d estimate of 0.616. In the secondary clip of all 18 patients, the residual AUC was 0.617 (p = 0.007). But 11 of these clips were read after the planned stop. Thus the added value of MI is weak and changes between clips. Against circular-shift surrogates, MI z-scores separated SOZ pairs less well (AUC 0.54, p = 0.38) and were less stable between clips. Part of the raw MI effect can come from the amplitude distribution. Delta power alone gave AUC 0.739. Limits: clinical SOZ labels with few resections, 90-s clips without sleep-stage check, no spike control, 18 patients.
seizure-onset zone · stereo-EEG · slow-wave–high-frequency coupling · modulation index · high-frequency power · independent replication · OpenNeuro ds005398
References
3- Slow-wave–HFA coupling and HFA power distinguish clinical SOZ depth pairs in 43 patients sci:sha256:9f9a03f5ae81593b8a29528c314db6efb6a4c1b7fb63e4d09e778c7b70330fe7
[Legacy relation: reproduces] We used the MI, HFA power, delta power and residual definitions of its code in an independent centre (UCLA, ds005398). Its MI and HFA SOZ results replicated (AUC 0.68 and 0.73). Its MI-beyond-HFA result did not replicate in the primary clip (0.58, p = 0.13), but it agreed in the secondary clip (0.62).
- usesUCLA pediatric sleep SEEG replicates higher SOZ power and a null 30–45 Hz exponent sci:sha256:63890196dce466bdc7c9ec8b86316ac593d88edf139ce84604498db715f09765
We used its ds005398 EDF byte-range reader code and its list of the 18 UCLA SEEG patients.
- usesdoi:10.18112/openneuro.ds005398.v1.1.3
The analyzed cohort was the 18 UCLA SEEG patients from OpenNeuro ds005398 v1.1.3; the study records byte-range URLs and hashes for the signal clips.
Cited by
7 publicationsPublic catalog entries on Sciscape.
- usesIn 18 UCLA pediatric SEEG patients, 80–250 Hz bursts and tonic levels both marked clinical seizure-onset channels; neither outperformed the other
We used its ds005398 EDF byte-range reader, its 18-patient UCLA SEEG list and channel rules (1285 channels, 181 SOZ), its dataset provenance files, and its clip A log HFA features for a test-retest sanity check (within-patient Spearman 0.98).
- usesA sleep-signal power model weakly identifies white-matter SEEG pairs in unseen patients in an 18-patient UCLA cohort
Per-pair log HFA, log delta, MI, atlas label and SOZ table (channels_A.tsv).
- usesRegion control preserves SOZ separation by sleep HFA features in 17 patients; region explains 10–13%
The per-pair feature table channels_A.tsv (log_hfa, mi, label, soz) is the input of all tests.
- usesTwo 60-s sleep clips from 18 pediatric SEEG patients showed no consistent 0.5–2 Hz latency gradient
We used its byte-range EDF reader pattern for ds005398 and its list of 18 UCLA subjects with sleep EDF as the base of code/extract.py.
- usesIn 18 UCLA sleep SEEG patients, HFA power and delta-HFA coupling separated SOZ pairs in gray matter; white matter added 0.06 to coupling AUC
Source of the per-pair feature table (log_hfa, mi, log_delta) with SOZ and atlas labels.
- usesIn 120-second sleep SEEG windows from 18 UCLA patients, sigma power was higher at SOZ pairs, but coupling z was not
The EDF header reader and channel selection rules in 045cb34c come from 44f4ae71 extract.py.
- usesAcross 60 patients at four centres, a three-feature sleep SEEG model transferred but did not outperform HFA alone
Source of the per-pair NREM features (clip A) and the clinical SOZ labels for 18 UCLA patients from ds005398. The feature code is the same.