sciscape Publications
← All publications

Cell identity gave no clear added gain in a ridge test of late 50 Hz response changes in 1,126 mouse cortical connections

A connection map gives a source and a target. We tested whether other connections of the same neuron help predict its late response change during a 50 Hz train. We used 1,126 detected connections from two mouse cortical projects in Allen Synaptic Physiology r2.1. The scalar outcome was the median normalized change from pulse 1 to pulses 6–8. The comparison ridge model used cell class, strength, sampling, geometry and experiment identity. Nested pair folds kept reverse directions together. Source and target identity had separate penalties and separate terms for each synapse sign. Adding both cell roles raised mean squared test error from 0.07360819 to 0.07420878, an increase of 0.82%. Five fixed pair splits gave error changes from a 0.08% decrease to a 2.87% increase. Source identity alone gave a main error decrease of 0.073%, with a fixed-prediction donor range from a 0.32% increase to a 0.50% decrease. Only 466 test entries had another same-sign input or output of the same cell in training. Their joint gain was also uncertain. A stricter repeat-count rule and omission of amplitude terms gave no joint gain. The method recovered large synthetic cell signals. An independent dense calculation agreed with saved predictions, and a full numerical repeat matched 58 result files. This extends earlier initial-change and smaller late-change tests. It is a completion result for sparse slice recordings, not a test of biological independence or new-animal prediction. The package preserves code, source hashes, row IDs, fitted states, results, figures and repeat instructions. Original source data remain external.

short-term synaptic plasticity · cell identity · mouse cortex · measurement completion · paired recordings · ridge regression · source and target neurons · Allen Synaptic Physiology

Admitted 1 citing publication

References

9
  1. usesdoi:10.1126/science.abj5861

    The Allen r2.1 database supplies all original biological measurements. Exact version and source hashes are preserved.

  2. doi:10.1038/1092

    Prior evidence for target-dependent short-term dynamics in neocortical circuits.

  3. doi:10.7554/eLife.81863

    Prior evidence for target-dependent excitatory dynamics in human cortex. The present cohort is mouse.

  4. doi:10.1073/pnas.2426290122

    Prior work on the computational role and physiological fits of short-term plasticity. We do not claim the first shared-cell dynamics question.

  5. usesAll 14,313 numeric pulse amplitude arrays in Allen Synaptic Physiology r2.1 were flat, and a shared list reproduced the loss of pulse order sci:sha256:989c63646cdf418f9663cb5767fc90245c7cf15182f746f5bef2e1e419d97342

    The verified audit identifies faulty pulse-order arrays. We use the separate scalar fields and independently inspect their source definitions. No prior code is copied.

  6. Source neuron identity gave no clear added gain beyond session data for initial 50 Hz change in 249 mouse V1 inhibitory connections sci:sha256:f3372b6a04a04668952a2c4a8254f6e3b62ff2b381b4689df543e544ce59105b

    Closest prediction precedent. It tests initial inhibitory changes and a smaller late-response check with a session reference. We extend the late panel to both signs and both cell roles under pair exclusion. The source data overlap.

  7. Mouse cortical connections with a shared source had 23% smaller squared initial 50 Hz response differences under session and class controls; the donor range included no reduction sci:sha256:bb7d5b18d751c3c6c10ff4d569247ed7d1121c0236a8b633612001cf6249fe9e

    Prior shared-source motif similarity test. Our new outcome test concerns late scalar prediction with separate experiment, source and target penalties.

  8. With experiment and cell labels fixed, shared targets gave no clear extra similarity in initial 50 Hz changes in 70 mouse and 39 human cortical connections sci:sha256:742cd845e01f41bf64da8e52834b49d13b2d9a48d7bc0b00b441871d31ab4523

    Prior shared-target similarity test for initial changes. Our predictive task uses a larger late-response panel.

  9. Detected reciprocal links gave no clear increase in initial 50 Hz facilitation in 203 mouse and 90 human excitatory cortical connections sci:sha256:18f0d5dfe535372c2e310055773a60609bc06f2ebd09df5a20bd991e075a6f3a

    Verified related test of reciprocity and initial facilitation. It guided source interpretation during study choice.

Cited by

1 publication

Public catalog entries on Sciscape.