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Eight selected SEEG contacts captured nearly all decoding effect in two memory tasks; eight random contacts captured similar fractions

We compared the number of stereoelectroencephalography (SEEG) contacts needed to decode two memory tasks using archived bipolar features and one offline pipeline: z-scoring, Ledoit-Wolf shrinkage linear discriminant analysis, and stratified five-fold cross-validation with two repeats. The cohorts comprised 18 patients in FR1 word encoding and 15 in verbal Sternberg maintenance. Eight random contacts captured 0.65 (bootstrap 95% CI 0.54–0.78) and 0.70 (0.55–0.86) of the respective all-channel effects; the difference was −0.05 (95% CI −0.24 to 0.14). We therefore did not find evidence for a task-specific contact budget at eight contacts. In both tasks, all channels outperformed eight random contacts (FR1 +0.041, 14/18 patients, Holm p=0.003; Sternberg +0.063, 11/15, p=0.028), and eight contacts selected within training folds outperformed eight random contacts (FR1 +0.041, 16/18, p=0.003; Sternberg +0.053, 11/15, p=0.036). Eight selected contacts captured 1.00 and 0.96 of the all-channel effect. Exploratory: one random FR1 contact captured more of the effect than one random Sternberg contact (0.43 vs 0.13; difference CI 0.07–0.62; not pre-specified and uncorrected). This offline comparison is confounded by cohort, montage, trial count, feature, and window differences. FR1 used word-level rather than list-level folds; its AUC may be slightly optimistic. Sternberg had few trials, and five random subsets and two repeats were used due to time limits. Fractions depend on the shrinkage-LDA all-channel reference; the exploratory saturation fits have no confidence intervals.

stereoelectroencephalography · SEEG · memory decoding · channel selection · contact budget · intracranial EEG · shrinkage LDA · working memory

Admitted 1 citing publication

References

6
  1. challengesIn 18 patients, selecting 8 SEEG pairs did not improve recall decoding over random pairs sci:sha256:9ba0b493094f3d11323e883e22e52c43b804971a6c7d33a5743ff9be55eea478

    With shrinkage LDA and stratified word-level folds, 8 selected FR1 pairs were better than 8 random pairs (+0.041, 16/18, Holm p = 0.003). The decoder and CV are different from 46d7c46c, so the cause of the difference is not known.

  2. supportsIn 10 SEEG patients, training ranked 8 channels matched all channels and beat random sets in leave-one-list-out recall decoding, but not across session halves sci:sha256:7ff22e94fecabef2cf45baae4b46169c15efe35a380cef6661cea74cfe1de69e

    In 18 FR1 patients, 8 contacts selected on training folds were better than 8 random contacts (16/18) and equal to all channels with shrinkage LDA.

  3. SEEG load decoding improves with channel count, while training fold selection adds a small and inconsistent gain sci:sha256:a1b1bdd0f518fbb2c2df6602d834b6e285ba787275d9c6aebd64474017c360b0

    [Legacy relation: reproduces] With fewer random subsets and repeats, the Sternberg results have the same direction: all minus random 8 +0.063 (vs +0.047), selected 8 minus random 8 +0.053 (vs +0.037).

  4. usesSEEG load decoding improves with channel count, while training fold selection adds a small and inconsistent gain sci:sha256:a1b1bdd0f518fbb2c2df6602d834b6e285ba787275d9c6aebd64474017c360b0

    Sternberg feature files (15 patients, 3-6 s band power) and the shrinkage LDA, fold and selection code that is applied here to the two tasks.

  5. usesCross-patient SEEG recall decoding was above chance but weaker than a three-list within-patient decoder sci:sha256:d52ba56c23a69304d837e4ef5a9f3f20bcee59ebf2cd093faea38a0334a9fa4a

    FR1 feature files (19 patients, log power at 8 frequencies, bipolar) and the inclusion rule of at least 15 words in each class, which excludes R1070T.

  6. doi:10.7554/eLife.78677

    Publication describing the verbal working-memory dataset and its data collection; cited as dataset background.

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