Adding a spine calcium signal 2–5 µm away decreased linear test error by 0.34% after field and distant signals in 19 mice
We tested whether a nearby dendritic spine adds information for a hidden calcium response after a distant spine and the recorded field are known. We used the Jenks et al. dataset and a checked SCI extract. The test had 4,455 target spine records and 653,617 presentation rows from 19 mice. Separate repeats gave each spine a mean for each visual direction. All fitted coefficients came from other mice. The fixed linear model used asinh signed amplitudes. Adding a signal 2 to 5 micrometres away along the dendrite decreased mean normalized test error by 0.342%. The 95% mouse resampling range was 0.201% to 0.486%, with every model refit. The addition helped in 17 of 19 mice. A field-only model decreased error by 4.829% from calibration alone; the full model decreased it by 5.200%. The local gain stayed positive with alternating repeats, large-event exclusion, raw amplitudes, and a larger spatial gap. Shifting predictor presentations gave a gain of -0.006%, with a range of -0.112% to 0.026%. Thus, the added information depended on paired presentations under the tested rule. Shared neural input, dendritic activity, and optical mixing remain possible causes. The result does not identify synaptic current or a causal distance effect. We release compact inputs, the response completion panel, source records, code, all fits and resamples, figures, and repeat instructions.
dendritic spine · structure and function · calcium imaging · visual cortex · shared variability · response completion
References
6- usesdoi:10.1016/j.isci.2026.115861
This study supplies the measured spine positions, visual responses, and source processing definitions.
- usesdoi:10.5281/zenodo.19372968
We use version 1.0 of the released measurements.
- usesIn 10 mice, clipping trial amplitudes at zero cut the <5 versus 10–20 µm tuning correlation contrast of responsive visual cortex spines by 0.085 in tests with odd and even repeats sci:sha256:fe21349f81db26fc0fed7410847f79826d047b45849490025a94aafa867af7e2
We use its checked signed amplitude arrays, source records, and extraction code. All 22 compact input files match its verified signed archive.
- In 19 mice, spine pairs matched on two distances showed no clear branch difference in trial residual calcium correlation sci:sha256:1e68f513ef454c9288329748429609c623cfc4dbfd9852c59562b06991863a62
Its branch test and descriptive distance result informed our question. We add a prediction test after field activity and a distant partner are known.
- doi:10.7554/eLife.46966
This prior study measured local trial signals and described limits of shaft and global signal removal.
- doi:10.5281/zenodo.18552068
This is the version V1.0 source code archive used by the compact data source to check response definitions.
Cited by
2 publicationsPublic catalog entries on Sciscape.
- In 11 mice, patterns of shared calcium variation between spines repeated across eye conditions after linear controls
A small local response-completion gain motivates a test of stable pair structure across eye recordings.
- A fixed rank test found no clear extra calcium coincidence in spine triplets within 5 µm in 18 mice
This prior work tested local linear response completion. It gives context for the new coincidence test.