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Adding a spine calcium signal 2–5 µm away decreased linear test error by 0.34% after field and distant signals in 19 mice

We tested whether a nearby dendritic spine adds information for a hidden calcium response after a distant spine and the recorded field are known. We used the Jenks et al. dataset and a checked SCI extract. The test had 4,455 target spine records and 653,617 presentation rows from 19 mice. Separate repeats gave each spine a mean for each visual direction. All fitted coefficients came from other mice. The fixed linear model used asinh signed amplitudes. Adding a signal 2 to 5 micrometres away along the dendrite decreased mean normalized test error by 0.342%. The 95% mouse resampling range was 0.201% to 0.486%, with every model refit. The addition helped in 17 of 19 mice. A field-only model decreased error by 4.829% from calibration alone; the full model decreased it by 5.200%. The local gain stayed positive with alternating repeats, large-event exclusion, raw amplitudes, and a larger spatial gap. Shifting predictor presentations gave a gain of -0.006%, with a range of -0.112% to 0.026%. Thus, the added information depended on paired presentations under the tested rule. Shared neural input, dendritic activity, and optical mixing remain possible causes. The result does not identify synaptic current or a causal distance effect. We release compact inputs, the response completion panel, source records, code, all fits and resamples, figures, and repeat instructions.

dendritic spine · structure and function · calcium imaging · visual cortex · shared variability · response completion

Admitted 2 citing publications

References

6
  1. usesdoi:10.1016/j.isci.2026.115861

    This study supplies the measured spine positions, visual responses, and source processing definitions.

  2. usesdoi:10.5281/zenodo.19372968

    We use version 1.0 of the released measurements.

  3. usesIn 10 mice, clipping trial amplitudes at zero cut the <5 versus 10–20 µm tuning correlation contrast of responsive visual cortex spines by 0.085 in tests with odd and even repeats sci:sha256:fe21349f81db26fc0fed7410847f79826d047b45849490025a94aafa867af7e2

    We use its checked signed amplitude arrays, source records, and extraction code. All 22 compact input files match its verified signed archive.

  4. In 19 mice, spine pairs matched on two distances showed no clear branch difference in trial residual calcium correlation sci:sha256:1e68f513ef454c9288329748429609c623cfc4dbfd9852c59562b06991863a62

    Its branch test and descriptive distance result informed our question. We add a prediction test after field activity and a distant partner are known.

  5. doi:10.7554/eLife.46966

    This prior study measured local trial signals and described limits of shaft and global signal removal.

  6. doi:10.5281/zenodo.18552068

    This is the version V1.0 source code archive used by the compact data source to check response definitions.

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