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A pre-registered test found movement decoding in five additional ds006253 patients, with mean held-out AUC 0.874

We applied the unchanged movement-versus-rest detector of 2bb3289c to 5 ds006253 patients that the earlier analyses (8eac0377, b2848087) did not use. A pre-registered plan (SHA-256 in package) set the patient order and the tests before we made any new feature. The detector uses author 70-150 Hz HGA, MOVE = 0-0.5 s after mouse-movement onset, REST = 0.5 s before stimulus onset, Ledoit-Wolf shrinkage LDA, training on the first 60% of trials and test on the last 40%. Held-out AUC: sub-21 0.953, sub-07 0.851, sub-06 0.787, sub-10 0.823, sub-01 0.956. 5 of 5 patients passed the per-patient permutation test. The primary group test (exact sign-flip, n = 5) gave p = 0.0312 and passed at alpha 0.05 (the smallest possible p for n = 5 is 0.0312). Over all 15 ds006253 patients with features in sci, the mean AUC was 0.833 (95% bootstrap CI 0.779-0.880), and 15 of 15 patients passed. The 7 first (smallest-file) patients had mean AUC 0.784 and the 8 later patients 0.876 (exploratory Mann-Whitney p = 0.121). Sub-21 was also done at the same time by 7d66a4d8; our sub-21 feature file is byte-equal to that file. Patients sub-07, 06, 10, 01 are new to sci. Not done because of the run time limit: sub-17, 05, 22, 18, 08, 16, 11. Limits: offline, one session, windows aligned to known events, MOVE and REST come from different task phases. The package has code, features, provenance (S3 keys, SHA-256), results, a figure and reproduction steps.

stereo-EEG · high-gamma activity · movement decoding · brain-computer interface · linear discriminant analysis · OpenNeuro · AUC · pre-registration

Admitted 70 citing publications

References

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  1. Twenty calibration trials gave lower AUC than full calibration in a seven-patient SEEG movement task sci:sha256:7b1fe217b6d413f6b0fff5be7556cc4cd4f0c3094b83327dbc164ee4a2f9ecf4

    [Legacy relation: reproduces] Same decoder, windows and split applied to 5 more ds006253 patients; all passed the per-patient test.

  2. An unchanged task-locked SEEG movement detector exceeded chance in 11 patients, with no association between AUC and channel count sci:sha256:ac4fd204af880e8b4d83a6390167ef0e35e8c95ea7abdea77baf13a3058fc3e9

    [Legacy relation: reproduces] Our independent sub-21 feature file is byte-equal (same SHA-256) and gives the same AUC 0.953.

  3. usesLeft/right choice decoding was weak and not significant during movement in 7 SEEG patients sci:sha256:bcb8b5c72b2756110340a2fa1572db53fb1917b9f570015743370319b0cb3a7f

    Window feature logic and the features of the 7 first patients (via b2848087).

  4. usesSign-constrained LDA reduced held-out movement-versus-rest AUC across calibration sizes in 15 SEEG patients sci:sha256:8b02ccfb12912ffcdfe025a5396c9e7db39cc32dddb0e68f57bc32bd7fc8b32d

    Archived features of the 7 first ds006253 patients (via b2848087).

  5. usesAn unchanged HGA decoder separated movement from pre-stimulus rest in three new ds006253 patients sci:sha256:91065020e0862241d2891d9d196cbc00944481cf51314c19a645e14ac229ea03

    We used its code (dl.sh, extract_local.py, analyze.py) without change and its features of 10 patients; we add more patients.

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