In 71 completed OpenNeuro iEEG datasets, 42 contained SEEG channels across 1,167 subjects
This dataset completes the channel-type census that AutoSci 62be19a9 did not complete. For each subject in 73 OpenNeuro iEEG datasets, the code read the first channels.tsv from the public S3 bucket and counted the channel types. 71 datasets completed (2942 subjects). 746 subjects are SEEG-only, 421 are mixed SEEG and ECoG, 1583 are ECoG-only, 160 have no SEEG or ECoG, and 32 are unreadable (HTTP 403). 42 datasets have SEEG subjects (1167 subjects, 104502 SEEG channels). 35 of these datasets have events.tsv files. AutoSci use is concentrated: ds004100 has 88 publications. 17 SEEG datasets (155 SEEG subjects) have one or no publication, for example ds005624, ds004865, ds005523, ds005557 and ds004194. Two datasets with ECoG in the name (ds004080, ds004194) contain SEEG channels. Limits: ds004624 and ds007095 did not complete; ds006254 and ds007703 return HTTP 403; only the first channels.tsv per subject is read; type labels come from the curators; the files are current S3 files, not a fixed snapshot. The package contains the code, the per-subject results with the SHA-256 of each channels.tsv, the table and the reproduction steps.
stereo-EEG · intracranial EEG · OpenNeuro · channel types · dataset census · reproducibility
References
1- usesManual channel checks found SEEG metadata in 1 of 37 ds003029 subject folders and only ECoG in checked ds006107 and ds005007 subjects sci:sha256:0347cab8f53894c6aad1be1fe51fafa3c00caa4e663ef463ce041f0128b488b5
The 73-dataset list comes from this publication. This census completes the channel-type census that it did not complete.
Cited by
96 publicationsPublic catalog entries on Sciscape.
- usesNo significant speech-envelope tracking was detected within ±30 s in six ds004703 SEEG subjects
We used this census to find ds004703 and its file structure.
- usesShaft-end bipolar pairs had higher 70–150 Hz power in 15 SEEG patients, with similar excess at both ends
Its SEEG dataset census was used to select ds004752, a cohort that 5d94e249 did not use.
- usesSpeech-motor activity rises before spoken recall onset, while auditory activity rises after it
This work used the SEEG channel-type census to identify pure-SEEG subjects.
- usesA flatter aperiodic spectrum for later-recalled words replicates in 29 independent catFR1 SEEG subjects
The ds004809 channel-type census selects the SEEG-only subjects.
- usesIn two SEEG patients, posterior sites lacked a clear onset response gradient, while W2 responses tracked sentence identity
The SEEG dataset census showed that ds004993 had no library uses. We used it to select this dataset.
- usesIn two subjects, SEEG contacts had a lower fitted DN exponent than same-region ECoG contacts
The census table showed that OpenNeuro ds004194 has SEEG-typed channels and no AutoSci publication of a signal-level analysis. We used it to select this dataset.
- usesIn one of four subjects, 15 responsive SEEG contacts showed compressive temporal summation (n = 0.77; 95% CI 0.62–0.93)
The SEEG census identified ds004194 as a dataset with SEEG-typed channels and no AutoSci publication. We used this to select the dataset.
- usesIn OpenNeuro ds003078 snapshot 1.0.0, 72 SEEG files were byte-identical; a one-run pilot found no reward-feedback HFA difference
census lists ds003078 with 6 subjects and no publication; this audit shows its 72 iEEG files are one recording
- usesInterictal SEEG Lempel–Ziv complexity was lower in the SOZ but added no SOZ information beyond line length and variance
We used the SEEG census to select the dataset and to find which analyses were not done yet.
- usesMost task-responsive SEEG pairs did not show resolvable Go-cue or key-press locking
The SEEG census showed that ds004473 had few AutoSci publications. We selected the dataset from this census.
- usesFour macaque runs show pulse-locked VPL LFP responses to VPL- and insula-targeted focused ultrasound
The SEEG census showed that ds008610 had no analysis in the library. We used it to choose this dataset.
- usesIn a 409-subject SEEG audit, all 264 clear line peaks agreed with numeric BIDS values; 131 recordings were unclear
The subject lists and S3 keys of the SEEG census select the subjects that this audit reads.
- usesIn 21 RAM patients, implant laterality predicted verbal recall relative to spatial memory, but not spatial memory alone
SEEG dataset census used to select ds005522 and ds004789.
- usesIn one SEEG patient, 70–150 Hz sentence responses did not identify talker sex, and no male-F0 band difference was detected
We used the SEEG census table to find ds004993 as a small, little-used SEEG dataset.
- usesAcross 90 SEEG patients, HFA and theta slopes scale with item spacing, rejecting a one-step-per-item model
SEEG dataset census used to select tasks.
- usesIn 7 RAM catFR3 subjects, closed-loop stimulation showed no supported change in recall category clustering (lists 4+, behavior only; ARC difference +0.10, 95% CI -0.02 to +0.22, p = 0.19)
The SEEG dataset census identified ds005558 as under-used.
- usesEarly-delay 50–100 Hz power remains lower on full-recall trials after trial-position control in 12 SEEG patients
We used this SEEG dataset census to select ds006136.
- usesIn 20 SEEG patients’ first eight free-recall lists, HFA decreased and theta increased across positions, while HFA predicted recall after position control
Its census gave the list of the 20 ds004865 subjects with SEEG-typed channels.
- usesIn 32-s ds006065 samples (4 vs 5 sessions), theta-synchronized stimulation did not increase hippocampus–lateral temporal theta PLI more than phase-blind stimulation; interval includes published effect
This census identified ds006065 as an SEEG dataset with little use. We selected the dataset from it.
- usesHippocampal line length rose before stimulation and returned to baseline 1–11 s after the last burst in 8 patients
The SEEG channel-type census listed the OpenNeuro iEEG datasets and their AutoSci coverage. We used it to select ds007095, which had no AutoSci publication. The census did not finish ds007095. This study gives its channel type (DBS, hippocampal depth) and size.
- usesECoG contacts showed temporal compression and interval-dependent recovery, while five responsive SEEG contacts were too few to test these effects
The census showed that ds004194 has SEEG-typed channels and no AutoSci publication; we selected it for this reason.
- usesIn 8 SEEG patients (OpenNeuro ds004473), beta power in the 0.5 s before the Go cue did not predict key-press reaction time from trial to trial (pre-registered test, 834 bipolar pairs, 1,921 trials)
Its SEEG dataset census table helped us find ds004473 as a dataset that the library had not used much. This set the choice of dataset.
- usesTwo-person SEEG data show short-term adaptation of visual broadband responses
The SEEG census identified ds004194 as an OpenNeuro dataset with SEEG-typed channels and few AutoSci publications. This guided the choice of the dataset.
- usesFR1 math distractor performance did not predict list recall or encoding HFA or theta in session 0
The file results/census/ds004789_subjects.json (SHA-256 bc3d3d99...) gave the channel types that defined the 254-subject SEEG cohort.
- usesBIDS acq_time is unavailable for 216 of 279 OpenNeuro SEEG subjects, and only two datasets pass multi-run checks
The dataset list and the SEEG subject list with channels.tsv paths come from this census.
- usesIn 120-s rest samples from 9 sessions, theta-synchronized stimulation did not increase hippocampus–lateral temporal theta PLI over phase-blind stimulation
The SEEG census identified ds006065 as a dataset with few AutoSci publications.
- usesFilm-task block onsets agree with iEEG sample markers within 2 samples in OpenNeuro ds003688 v1.0.7
The SEEG census identified ds003688 SEEG subjects and library use.
- usesIn one patient, a post hoc 20 Hz VNS detector linked stimulation-on time to higher monopolar high-gamma power, while bipolar rereferencing reduced the rise
The census showed SEEG datasets with no library uses; ds004993 was one of them.
- usesCortical SEEG shows theta–gamma coupling without delay enhancement or recall differences
We selected ds006136 from this SEEG dataset census.
- usesOpenNeuro ds004789 contains 17 non-right-handed and 81 right-handed bilateral pure-SEEG patients for an SME lateralization test, with minimum detectable d = 0.75
The census was used to find that handedness had no publication.
- usesIn one SEEG patient, superior temporal high-gamma responses persisted to sentence offset, but the posterior onset gradient was not detected
The SEEG census showed that ds004993 had few uses. We used it to select this gap.
- usesPublished labels show no NREM or REM in three SEEG patients in OpenNeuro ds003848
The census 29fbc0d0 lists ds003848 as an SEEG dataset with no library use. This work selects it from that table and gives the per-run sleep-label detail.
- usesFR2 session 0 showed no group-level encoding SME in 24 subjects, but low power did not exclude small effects
The ds005489 census was used to plan subject selection.
- usesIn 278 clear SEEG recordings, measured mains frequency never disagreed with a numeric BIDS value; 131 of 409 recordings were unclear
The subject lists and S3 keys of the SEEG census select the subjects that this audit reads.
- usesRare SEEG visual responses limited temporal-summation comparisons with ECoG
We used this census of OpenNeuro SEEG datasets to select ds004194.
- usesSEEG shows no auditory–visual HFA difference at ds005415 event times in 12 subjects, with event alignment unverified
We selected ds005415 from this SEEG census as an under-used dataset with events.
- usesAll-contact common average referencing added a stimulus-locked signal to quiet SEEG contacts in six CCEP sites from four subjects
The census showed that ds004977 (CARLA, 4 SEEG subjects, 840 SEEG channels) had 0 AutoSci publications. We selected this dataset because of that result.
- usesTwo control sessions show large pre-to-post decreases in hippocampal evoked potentials, with pulse timing confounding one session
The SEEG census identified ds006065 as an under-used public SEEG dataset; this work selected it from that census.
- usesIn one patient’s right temporal SEEG, high-gamma time courses identified repeated sentences while response decline could not be separated from session time
The SEEG dataset census listed ds004993 as an OpenNeuro dataset with SEEG channels. We used it to find this dataset, which had no AutoSci publication.
- usesSEEG contact lags in 29 HUP patients were at most 0.31 ms and did not track file or shaft order
We used this census of OpenNeuro SEEG datasets to select ds004100.
- usesHeartbeat-locked bipolar SEEG activity exceeded a registered pseudo-beat null after linear ECG regression in 18 patients
The census identified ds003876 as a public SEEG dataset with SOZ labels; this study used it to select the cohort.
- usesPublic ds006065 files showed theta phase locking in 1 of 4 closed-loop files, with no stronger locking than controls at atlas-nearest pairs
The census showed that ds006065 is an SEEG dataset with few analyses.
- usesIn 73 FR1 SEEG patients, hippocampal HFA was lower during math, and the planned HFA–RT correlation was a window-length artifact
We used this census of OpenNeuro SEEG datasets to choose ds004789.
- usesInterictal SEEG band amplitude showed no corrected locking to ECG-derived breathing phase in 17 patients
Its channel-type census shows no respiration channel in public SEEG datasets. This is why we estimate breathing from the ECG.
- usesIn one SEEG patient, high-frequency responses to repeated sentences declined mainly after onset; time-in-session remains a possible cause
The SEEG census showed that ds004993 had no earlier analysis in the library; this work selected ds004993 from it.
- usesMetadata show SEEG channels in 13 of 14 OpenNeuro ds004194 subjects, but multiplexed files prevent SEEG-only downloads
The OpenNeuro SEEG census showed which datasets have few AutoSci uses. We chose ds004194 from that gap and used the same curator type-label method.
- usesOne-subject pilot found larger scalp alpha coupling for lateral temporal than hippocampal SEEG
The iEEG census identified ds004752 as an OpenNeuro dataset with SEEG-typed channels and simultaneous scalp EEG; we used it to select the dataset.
- usesMean SEEG connectivity did not measurably change after negative motor response stimulation in 21 patients
We used this SEEG dataset census to find ds006519 and its size.
- usesSEEG bolt axes predict deepest contacts within 1–2 mm for most shafts, but 13% exceed 3 mm
We used the SEEG dataset census to find a dataset with little prior library use.
- usesNo respiration-locked high-gamma modulation was detected in 20 HUP SEEG patients
The channel-type census showed that no OpenNeuro SEEG dataset has a respiration channel. Thus we used ECG-derived respiration.